BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0054.p
         (258 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311188|ref|YP_003775280.1| tRNA/rRNA methyltransferase [He...   497   e-142
gi|300311508|ref|YP_003775600.1| tRNA/rRNA methyltransferase [He...    84   1e-17

>gi|300311188|ref|YP_003775280.1| tRNA/rRNA methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 245

 Score =  497 bits (1279), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/245 (100%), Positives = 245/245 (100%)

Query: 14  MKSKMIFGFHAVTSRIRHEASSVDEIYVDAERRDRRMLDLLHAAKEANVRIIQADDQRLA 73
           MKSKMIFGFHAVTSRIRHEASSVDEIYVDAERRDRRMLDLLHAAKEANVRIIQADDQRLA
Sbjct: 1   MKSKMIFGFHAVTSRIRHEASSVDEIYVDAERRDRRMLDLLHAAKEANVRIIQADDQRLA 60

Query: 74  AMVGTRRHQGVVAKAAALSLARTLDELLDAVVGPPLLLILDGITDPHNLGACLRVADGAG 133
           AMVGTRRHQGVVAKAAALSLARTLDELLDAVVGPPLLLILDGITDPHNLGACLRVADGAG
Sbjct: 61  AMVGTRRHQGVVAKAAALSLARTLDELLDAVVGPPLLLILDGITDPHNLGACLRVADGAG 120

Query: 134 AHAVIAPKDRAVGLNATAMKVSSGASDTVPYITVTNLARTMRDLKERGVWIIGTSDDAEK 193
           AHAVIAPKDRAVGLNATAMKVSSGASDTVPYITVTNLARTMRDLKERGVWIIGTSDDAEK
Sbjct: 121 AHAVIAPKDRAVGLNATAMKVSSGASDTVPYITVTNLARTMRDLKERGVWIIGTSDDAEK 180

Query: 194 GLYEGDFTGPTALVMGSEGEGMRRLTRETCDVLVNIPMFGSVESLNVSVASGVCLYEARR 253
           GLYEGDFTGPTALVMGSEGEGMRRLTRETCDVLVNIPMFGSVESLNVSVASGVCLYEARR
Sbjct: 181 GLYEGDFTGPTALVMGSEGEGMRRLTRETCDVLVNIPMFGSVESLNVSVASGVCLYEARR 240

Query: 254 QRLPK 258
           QRLPK
Sbjct: 241 QRLPK 245


>gi|300311508|ref|YP_003775600.1| tRNA/rRNA methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 263

 Score = 84.0 bits (206), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 74/148 (50%), Gaps = 9/148 (6%)

Query: 111 LILDGITDPHNLGACLRVADGAGAHAVIAPKDRAVGLNATAMKVSSGAS---DTVPYITV 167
           ++LDG+ DP NLG+ LR A  AG   V          +   ++   GA    D V    +
Sbjct: 118 VLLDGLQDPGNLGSILRSAAAAGVRQVFCSPGTVAAWSPKVLRAGMGAHFVLDIVEDADL 177

Query: 168 TNLARTMRDLKERGVWIIGTSDDAEKGLYEGDFTGPTALVMGSEGEGMRRLTRETCDVLV 227
             L    R      + ++ TS  A + +Y+ D +GP A ++G EG+G+    +E     V
Sbjct: 178 VALCAASR------IPLLATSSHAAQTIYDCDLSGPVAWLLGHEGQGVSAALQEAATQEV 231

Query: 228 NIPMFGSVESLNVSVASGVCLYEARRQR 255
            IP  G +ESLNV+ A+ VCL+E  RQR
Sbjct: 232 VIPHLGQMESLNVAAAAAVCLFEQLRQR 259


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 776,716
Number of extensions: 31867
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 2
Length of query: 258
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,226,865
Effective search space: 214701375
Effective search space used: 214701375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)