BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0053.p
         (845 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311187|ref|YP_003775279.1| exoribonuclease RNAse R protein...  1701   0.0  

>gi|300311187|ref|YP_003775279.1| exoribonuclease RNAse R protein
           [Herbaspirillum seropedicae SmR1]
          Length = 839

 Score = 1701 bits (4406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 834/839 (99%), Positives = 836/839 (99%)

Query: 7   LSQFPYSIPSREEILGILRTSSGAQNAAALAAALGVKPEEMDGLTRRLNAMERDGQIKPD 66
           +SQFPYSIPSREEILGILRTSSGAQNAAALAAALGVKPEEMDGLTRRLNAMERDGQIKPD
Sbjct: 1   MSQFPYSIPSREEILGILRTSSGAQNAAALAAALGVKPEEMDGLTRRLNAMERDGQIKPD 60

Query: 67  RAGHYKLTHSPDFILGRVSSHRDGFGFLLPDDGSDDLFLPEKEMQKVMHGDRVQARIVGT 126
           RAGHYKLTHSPDFILGRVSSHRDGFGFLLPDDGSDDLFLPEKEMQKVMHGDRVQARIVGT
Sbjct: 61  RAGHYKLTHSPDFILGRVSSHRDGFGFLLPDDGSDDLFLPEKEMQKVMHGDRVQARIVGT 120

Query: 127 DRRGRPEGTIVEVVERANTHVIGRLLNENGVWIVAPEDKRIGHDVLLAGPPGKAKAGQVV 186
           DRRGRPEGTIVEVVERANTHVIGRLLNENGVWIVAPEDKRIGHDVLLAGPPGKAKAGQVV
Sbjct: 121 DRRGRPEGTIVEVVERANTHVIGRLLNENGVWIVAPEDKRIGHDVLLAGPPGKAKAGQVV 180

Query: 187 SVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSEAAKKLSAKLPSEV 246
           SVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSEAAKKLSAKLPSEV
Sbjct: 181 SVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSEAAKKLSAKLPSEV 240

Query: 247 KAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRTKGYRLIVAIADVSHYVKPN 306
           KAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRTKGYRLIVAIADVSHYVKPN
Sbjct: 241 KAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRTKGYRLIVAIADVSHYVKPN 300

Query: 307 DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ 366
           DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ
Sbjct: 301 DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ 360

Query: 367 FYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEVFQALLTARQARGAID 426
           FYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEVFQALLTARQARGAID
Sbjct: 361 FYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEVFQALLTARQARGAID 420

Query: 427 FETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADLLKRHDHPALYRIHAG 486
           FETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADLLKRHDHPALYRIHAG
Sbjct: 421 FETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADLLKRHDHPALYRIHAG 480

Query: 487 PTKEKLTTLRTFLKQVGLTLGGGDTPSASDYAELMPKVKARPDAVLIQTMLLRSMQQAVY 546
           PTKEKLTTLRTFLKQVGLTLGGGDTPSASDYAELMPKVKARPDAVLIQTMLLRSMQQAVY
Sbjct: 481 PTKEKLTTLRTFLKQVGLTLGGGDTPSASDYAELMPKVKARPDAVLIQTMLLRSMQQAVY 540

Query: 547 SPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEPKGIDSGALNTSISPA 606
           SPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEPKGIDSGALNTSISPA
Sbjct: 541 SPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEPKGIDSGALNTSISPA 600

Query: 607 ARKAQAQQRAADKAAGKKPRGESALAIWEALGLHCSANERRADEASRDVEAWLKCYFIRD 666
           ARKAQAQQRAADKAAGKKPRGESALAIWEALGLHCSANERRADEASRDVEAWLKCYFIRD
Sbjct: 601 ARKAQAQQRAADKAAGKKPRGESALAIWEALGLHCSANERRADEASRDVEAWLKCYFIRD 660

Query: 667 KLGEEFTGTISGVATFGIFVQLDALYIEGLVHVTELGADYFQYDEARHELRGERTGIRYQ 726
           KLGEEFTGTISGVATFGIFVQLDALYIEGLVHVTELGADYFQYDEARHELRGERTGIRYQ
Sbjct: 661 KLGEEFTGTISGVATFGIFVQLDALYIEGLVHVTELGADYFQYDEARHELRGERTGIRYQ 720

Query: 727 LTDRVTVQVSRVDLDARKIDLSLVNEPGIRTLLKNEAKRAESAARSKSAGGRQAQEAGQP 786
           LTDRVTVQVSRVDLDARKIDLSLVNEPGIRTLLKNEAKRAESAARSKSAGGRQAQEA QP
Sbjct: 721 LTDRVTVQVSRVDLDARKIDLSLVNEPGIRTLLKNEAKRAESAARSKSAGGRQAQEASQP 780

Query: 787 AARGKKGAAAKPAAAAAGSKAKGGAKAKAGGARTSTARPGEADRKRAASKGFTKGKKKR 845
           AARGKKGAAAKPAA+AAGSKAKGGAKAKAGGARTST RPGEADRKRAASKGF KGKKKR
Sbjct: 781 AARGKKGAAAKPAASAAGSKAKGGAKAKAGGARTSTTRPGEADRKRAASKGFAKGKKKR 839


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,428,588
Number of extensions: 101943
Number of successful extensions: 262
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 1
Length of query: 845
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 752
Effective length of database: 1,179,515
Effective search space: 886995280
Effective search space used: 886995280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 135 (56.6 bits)