BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0052.p
         (494 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311186|ref|YP_003775278.1| deoxyribodipyrimidine photolyas...  1015   0.0  
gi|300309758|ref|YP_003773850.1| deoxyribodipyrimidine photolyas...    66   6e-12

>gi|300311186|ref|YP_003775278.1| deoxyribodipyrimidine photolyase
           [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score = 1015 bits (2625), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/494 (99%), Positives = 493/494 (99%)

Query: 1   MPQFDRSLVWFRRDLRMTDHAALYYALSQSRQVWCVFVFDTDILAALKAEGVTQDRRIDF 60
           MPQFDRSLVWFRRDLRMTDHAALYYALSQSRQVWCVFVFDTDILAALKAEGVTQDRRIDF
Sbjct: 1   MPQFDRSLVWFRRDLRMTDHAALYYALSQSRQVWCVFVFDTDILAALKAEGVTQDRRIDF 60

Query: 61  LLASVAELDEALRHAGGGLIVLHGSAVTQIPALAAELDVQAVYANTDYEPAAVERDAAVA 120
           LLASVAELDEALRHAGGGLIVLHGSAVTQIPALAAELDVQAVYANTDYEPAAVERDAAVA
Sbjct: 61  LLASVAELDEALRHAGGGLIVLHGSAVTQIPALAAELDVQAVYANTDYEPAAVERDAAVA 120

Query: 121 QTLAKSGAQLLSYKDQVIFEKDEVLTQSTKPFSVFTPYKNAWMSKLAAADGEFFLKPYPV 180
           QTLAKSGAQLLSYKDQVIFEKDEVLTQS KPFSVFTPYKNAWMSKLAAADG+FFLKPYPV
Sbjct: 121 QTLAKSGAQLLSYKDQVIFEKDEVLTQSAKPFSVFTPYKNAWMSKLAAADGDFFLKPYPV 180

Query: 181 EKYLTALASPPGKAGHALPSHKQLGFAPSNLQELKIPTGMSGAQSLLDEFLDRIGSYGAA 240
           EKYLTALASPPGKAGHALPSH+QLGFAPSNLQELKIPTGMSGAQSLLDEFLDRIGSYGAA
Sbjct: 181 EKYLTALASPPGKAGHALPSHRQLGFAPSNLQELKIPTGMSGAQSLLDEFLDRIGSYGAA 240

Query: 241 RDFPAVKGPSYLSVHLRFGTISIRTLARAAMQAMHAGQGAAGAAVWLSELTWRDFYFMIL 300
           RDFPAVKGPSYLSVHLRFGTISIRTLARAAMQAMHAGQGAAGAAVWLSELTWRDFYFMIL
Sbjct: 241 RDFPAVKGPSYLSVHLRFGTISIRTLARAAMQAMHAGQGAAGAAVWLSELTWRDFYFMIL 300

Query: 301 HHHPRVTRHAFKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYMHNRL 360
           HHHPRVTRHAFKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYMHNRL
Sbjct: 301 HHHPRVTRHAFKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYMHNRL 360

Query: 361 RMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVT 420
           RMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVT
Sbjct: 361 RMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVT 420

Query: 421 QSEKFDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDAGVVLGQNYPRPIVDHAQAR 480
           QSEKFDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDAGVVLGQNYPRPIVDHAQAR
Sbjct: 421 QSEKFDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDAGVVLGQNYPRPIVDHAQAR 480

Query: 481 ERTLARYAVVKKAE 494
           ERTLARYAVVKKAE
Sbjct: 481 ERTLARYAVVKKAE 494


>gi|300309758|ref|YP_003773850.1| deoxyribodipyrimidine photolyase
           [Herbaspirillum seropedicae SmR1]
          Length = 439

 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 92/197 (46%), Gaps = 36/197 (18%)

Query: 233 RIGSYGAARDF--PAVKGPSYLSVHLRFGTISIR-----TLARAAMQAMHAGQGAAGAAV 285
           R G+Y   R+    AV G   LS +L  G +S+R        R  ++  H          
Sbjct: 57  RPGAYARTRNSLDGAVTG---LSPYLTHGMVSLRDVLAGVCQRYPLEVQHK--------- 104

Query: 286 WLSELTWRDFYFMILHHHPRVTRHAFKPEYDAIQWEQGPQAEALFAAWCE-----GRTGY 340
           ++ EL WR FY  +       +R   +  +D++    GP  EA +A         G TG 
Sbjct: 105 FVYELGWRAFYRYVW------SRRGAR-IFDSLH--AGPLPEAAYARELPDDIRAGATGV 155

Query: 341 PLVDAAMAQINQSGYMHNRLRMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQ 400
           P++D A+  +  +G +HN  RM +AS++     + WR G  +   HL D DLA+N+  WQ
Sbjct: 156 PVIDQAVRTLYATGNLHNHARMWLASYVVHLRKVHWRAGADWMVGHLLDGDLASNHLSWQ 215

Query: 401 WASSSGCDAQPYFRIFN 417
           W + +G   +PY  +FN
Sbjct: 216 WVAGTGSH-KPY--LFN 229


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,590,374
Number of extensions: 67382
Number of successful extensions: 192
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 2
Length of query: 494
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 405
Effective length of database: 1,198,455
Effective search space: 485374275
Effective search space used: 485374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)