BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0050.p
         (163 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311184|ref|YP_003775276.1| acetyltransferase [Herbaspirill...   328   1e-91
gi|300314038|ref|YP_003778130.1| hypothetical protein Hsero_4761...   129   1e-31

>gi|300311184|ref|YP_003775276.1| acetyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 163

 Score =  328 bits (841), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 162/163 (99%), Positives = 163/163 (100%)

Query: 1   MDDIHIRRGYLPGAIGRVAELHAAYYTENWSFGVYFEARIATELAAFMSRYDDARDGFWT 60
           MDDIHIRRGYLPGAIGRVAELHAAYYTENWSFGVYFEARIATELAAFMSRYDDARDGFWT
Sbjct: 1   MDDIHIRRGYLPGAIGRVAELHAAYYTENWSFGVYFEARIATELAAFMSRYDDARDGFWT 60

Query: 61  ATVHGRIEGALTIDGQHAQEQGAWLRWFIASEKLRGRGVGDALLTEAVRCCAERDIASIY 120
           ATVHGRIEGALTIDGQHAQEQGAWLRWFIASEKLRGRGVGDALL+EAVRCCAERDIASIY
Sbjct: 61  ATVHGRIEGALTIDGQHAQEQGAWLRWFIASEKLRGRGVGDALLSEAVRCCAERDIASIY 120

Query: 121 LWTFEGLHAARTLYERHGFVRVEERIGSHWGVKLKEQRYELLL 163
           LWTFEGLHAARTLYERHGFVRVEERIGSHWGVKLKEQRYELLL
Sbjct: 121 LWTFEGLHAARTLYERHGFVRVEERIGSHWGVKLKEQRYELLL 163


>gi|300314038|ref|YP_003778130.1| hypothetical protein Hsero_4761
           [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score =  129 bits (324), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/152 (47%), Positives = 86/152 (56%), Gaps = 2/152 (1%)

Query: 8   RGYLPGAIGRVAELHAAYYTENWSFGVYFEARIATELAAFMSRYDDARDGFWTATVHGRI 67
           +GY PG IG +A LHA YY E   FGVYFE ++A+EL AF+          WT   HGR 
Sbjct: 170 QGYQPGCIGDIASLHARYYAEAAGFGVYFEHKVASELGAFVQSLPAPGKAIWTHQEHGRT 229

Query: 68  EGALTIDGQHAQEQGAWLRWFIASEKLRGRGVGDALLTEAVRCCAERDIASIYLWTFEGL 127
             ++ IDG  A    A LRWFI  + LRGRGVG  LL +A+           YLWTF+GL
Sbjct: 230 LASIVIDGDVASGL-AHLRWFIVDDSLRGRGVGRRLLEQAMALVDAHHF-DCYLWTFQGL 287

Query: 128 HAARTLYERHGFVRVEERIGSHWGVKLKEQRY 159
            AAR LY   GF   EE  G  WG ++ EQRY
Sbjct: 288 DAARHLYLEAGFALAEESPGEQWGSRVVEQRY 319


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 560,334
Number of extensions: 22378
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 2
Length of query: 163
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 85
Effective length of database: 1,250,540
Effective search space: 106295900
Effective search space used: 106295900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)