BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0049.p
         (458 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311183|ref|YP_003775275.1| Zn-dependent protease [Herbaspi...   488   e-139
gi|300312124|ref|YP_003776216.1| Zn-dependent protease TLDE prot...   100   4e-22

>gi|300311183|ref|YP_003775275.1| Zn-dependent protease
           [Herbaspirillum seropedicae SmR1]
          Length = 454

 Score =  488 bits (1256), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 229/230 (99%), Positives = 230/230 (100%)

Query: 1   MSDTPFTHSQDQLKQLAQDVLRYARDKGASDAAVDISEGSGLSVAVRKGRIETIEQNKDK 60
           MSDTPFTHSQDQLKQLAQDVLRYARDKGASDAAVDISEGSGLSVAVRKG+IETIEQNKDK
Sbjct: 1   MSDTPFTHSQDQLKQLAQDVLRYARDKGASDAAVDISEGSGLSVAVRKGKIETIEQNKDK 60

Query: 61  GIGVTVFLGEGRQVRRGNASTSDFSQQALKETVEAAYNIARFTSIDDCAGLPDAEMLEMA 120
           GIGVTVFLGEGRQVRRGNASTSDFSQQALKETVEAAYNIARFTSIDDCAGLPDAEMLEMA
Sbjct: 61  GIGVTVFLGEGRQVRRGNASTSDFSQQALKETVEAAYNIARFTSIDDCAGLPDAEMLEMA 120

Query: 121 PRDLKLFSPWNISAEEAVALAQRCETAALETDPRISNSEGAGVYVQHSHFIAANSRGFMG 180
           PRDLKLFSPWNISAEEAVALAQRCETAALETDPRISNSEGAGVYVQHSHFIAANSRGFMG
Sbjct: 121 PRDLKLFSPWNISAEEAVALAQRCETAALETDPRISNSEGAGVYVQHSHFIAANSRGFMG 180

Query: 181 GYPFSRHTISVAPIAGKGASMQRDDWYSSKRDPKKLAQPEAIGRYAAERA 230
           GYPFSRHTISVAPIAGKGASMQRDDWYSSKRDPKKLAQPEAIGRYAAERA
Sbjct: 181 GYPFSRHTISVAPIAGKGASMQRDDWYSSKRDPKKLAQPEAIGRYAAERA 230


>gi|300312124|ref|YP_003776216.1| Zn-dependent protease TLDE protein
           [Herbaspirillum seropedicae SmR1]
          Length = 457

 Score = 99.8 bits (247), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 109/221 (49%), Gaps = 4/221 (1%)

Query: 10  QDQLKQLAQDVLRYARDKGASDAAVDISEGSGLSVAVRKGRIETIEQNKDKGIGVTVFLG 69
           Q   + +AQ  L  AR  GA+ AAV I E   LS +V+ G+       +   + +++FLG
Sbjct: 17  QQHFETIAQQTLEVARQHGATAAAVQIEEVESLSASVQGGKPNERALRQSAQLRLSLFLG 76

Query: 70  EGRQVRRGNASTSDFSQQALKETVEAAYNIARFTSIDDCAGLPDAEMLEMAPRDLKLFSP 129
           +    R  + S+SD SQQ +   V    + A   + D  AGLP          DL+L   
Sbjct: 77  Q----REASVSSSDLSQQGVAALVARGMDSAAIAAEDQHAGLPGLSAYPSDDVDLELDHA 132

Query: 130 WNISAEEAVALAQRCETAALETDPRISNSEGAGVYVQHSHFIAANSRGFMGGYPFSRHTI 189
           W +   +AVAL  R E AAL     +   E A ++   +  + ANS GF+     +RH++
Sbjct: 133 WQLGLRDAVALVARIERAALAVSSAVPQIEQAVLFSSRTRRVLANSEGFLRSSASTRHSL 192

Query: 190 SVAPIAGKGASMQRDDWYSSKRDPKKLAQPEAIGRYAAERA 230
           S   +A +  + + + W+ ++RDP +L  PE++G  A  RA
Sbjct: 193 SCTAVAIRDGAKEIESWWDARRDPAQLPSPESLGACAGRRA 233


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.333    0.136    0.471 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,151,854
Number of extensions: 41142
Number of successful extensions: 212
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 2
Length of query: 458
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 370
Effective length of database: 1,203,190
Effective search space: 445180300
Effective search space used: 445180300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 132 (55.5 bits)