BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0037.p (306 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311170|ref|YP_003775262.1| dipeptide/oligopeptide/nickel A... 604 e-174 gi|300312480|ref|YP_003776572.1| dipeptide/oligopeptide/nickel A... 240 1e-64 gi|300310464|ref|YP_003774556.1| dipeptide/oligopeptide/nickel A... 186 3e-48 gi|300310893|ref|YP_003774985.1| dipeptide/oligopeptide/nickel A... 179 2e-46 gi|300310861|ref|YP_003774953.1| dipeptide/oligopeptide/nickel A... 135 5e-33 >gi|300311170|ref|YP_003775262.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 306 Score = 604 bits (1558), Expect = e-174, Method: Compositional matrix adjust. Identities = 306/306 (100%), Positives = 306/306 (100%) Query: 1 MFSFVIKRLLGLIPTLLLVAVLVFLFVHLLPGDPARLAAGPEADDKTVALVRADLGLDKP 60 MFSFVIKRLLGLIPTLLLVAVLVFLFVHLLPGDPARLAAGPEADDKTVALVRADLGLDKP Sbjct: 1 MFSFVIKRLLGLIPTLLLVAVLVFLFVHLLPGDPARLAAGPEADDKTVALVRADLGLDKP 60 Query: 61 LPEQFVNFFLNAARGDFGHSIRTKRPVSEEISARFWPTLWLTVVAMVWAVLFGLIIGISS 120 LPEQFVNFFLNAARGDFGHSIRTKRPVSEEISARFWPTLWLTVVAMVWAVLFGLIIGISS Sbjct: 61 LPEQFVNFFLNAARGDFGHSIRTKRPVSEEISARFWPTLWLTVVAMVWAVLFGLIIGISS 120 Query: 121 AVWRNQWPDRLGMTLAVSGISFPAFSLGILLVQVFSVKLGWLPTVGDDTWLHYILPSITL 180 AVWRNQWPDRLGMTLAVSGISFPAFSLGILLVQVFSVKLGWLPTVGDDTWLHYILPSITL Sbjct: 121 AVWRNQWPDRLGMTLAVSGISFPAFSLGILLVQVFSVKLGWLPTVGDDTWLHYILPSITL 180 Query: 181 GAAVAAVMARFTRSSFIEILQEDFVRTARAKGLTETVVVIKHCLRNALIPVVTMMGLQFG 240 GAAVAAVMARFTRSSFIEILQEDFVRTARAKGLTETVVVIKHCLRNALIPVVTMMGLQFG Sbjct: 181 GAAVAAVMARFTRSSFIEILQEDFVRTARAKGLTETVVVIKHCLRNALIPVVTMMGLQFG 240 Query: 241 FLLGGSILVEVVFNWPGMGRLLVDAVEMRDYPVIQAEILLFSLEFIFINLVVDVLYAVIN 300 FLLGGSILVEVVFNWPGMGRLLVDAVEMRDYPVIQAEILLFSLEFIFINLVVDVLYAVIN Sbjct: 241 FLLGGSILVEVVFNWPGMGRLLVDAVEMRDYPVIQAEILLFSLEFIFINLVVDVLYAVIN 300 Query: 301 PSIRFK 306 PSIRFK Sbjct: 301 PSIRFK 306 >gi|300312480|ref|YP_003776572.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 305 Score = 240 bits (612), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 121/306 (39%), Positives = 196/306 (64%), Gaps = 1/306 (0%) Query: 1 MFSFVIKRLLGLIPTLLLVAVLVFLFVHLLPGDPARLAAGPEADDKTVALVRADLGLDKP 60 M ++++RL + + V+V+ F +H+ GD A AGPEA V VR GLD+P Sbjct: 1 MLIYILRRLAIALCVAVTVSVVSFTLLHM-SGDLAVSIAGPEATAAQVESVRTQFGLDRP 59 Query: 61 LPEQFVNFFLNAARGDFGHSIRTKRPVSEEISARFWPTLWLTVVAMVWAVLFGLIIGISS 120 + Q++++ A + DFG S + PV E I+ R T L A++ AVL + +G+ + Sbjct: 60 MATQYLDWLGRAVQLDFGKSFYFQGPVMEMIAERLPITFKLGGSALLLAVLTAIPLGVLA 119 Query: 121 AVWRNQWPDRLGMTLAVSGISFPAFSLGILLVQVFSVKLGWLPTVGDDTWLHYILPSITL 180 A++R+ W DR + +AV G + P+F G+ L+ +F+V L WLP G+++W H+ILP++ L Sbjct: 120 AIYRDTWLDRAALLIAVVGQAMPSFWFGLTLILIFAVTLHWLPVAGNESWQHFILPAVAL 179 Query: 181 GAAVAAVMARFTRSSFIEILQEDFVRTARAKGLTETVVVIKHCLRNALIPVVTMMGLQFG 240 G M R TRS +E+L D++RTARAKGL+++ VV KH LRNA+IPVV + ++ G Sbjct: 180 GYYAMPAMMRLTRSGMLEVLGSDYIRTARAKGLSKSRVVFKHALRNAVIPVVALAAVELG 239 Query: 241 FLLGGSILVEVVFNWPGMGRLLVDAVEMRDYPVIQAEILLFSLEFIFINLVVDVLYAVIN 300 F+LGGS+++E V++ G+G+L DA+ DYPV+QA +L+ ++ +I + + DV+ A+++ Sbjct: 240 FMLGGSVVIESVYSMQGLGQLAWDAISRNDYPVVQAVVLIIAMFYIGLTFLADVINALLD 299 Query: 301 PSIRFK 306 P IR + Sbjct: 300 PRIRTR 305 >gi|300310464|ref|YP_003774556.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 318 Score = 186 bits (471), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 106/292 (36%), Positives = 163/292 (55%), Gaps = 8/292 (2%) Query: 23 VFLFVHLLPGDPARLAAGPEADDKTVALVRADLGLDKPLPEQFVNFFLNAARGDFGHSIR 82 VF +LLPGD A+ A G A +TVA +R GLD P P ++ ++ N G+ G S+ Sbjct: 27 VFFITNLLPGDAAQTALGQAATPETVAALRLQYGLDLPAPLRYAHWLGNLLSGNPGMSLV 86 Query: 83 TKRPVSEEISARFWPTLWLTVVAMVWAVLFGLIIGISSAVWRNQWPDRLGMTLAVSGISF 142 PV++ I R +L L V + +V L +GI SA++R + DR AVS +S Sbjct: 87 NNVPVAQMIGGRLPASLMLAAVTALVSVPLALFLGIFSAMYRGSFFDRAVNVSAVSMVSV 146 Query: 143 PAFSLGILLVQVFSVKLGWLPTV---GDDTWL-----HYILPSITLGAAVAAVMARFTRS 194 P F + + V +F+VKL WL + GD L Y +P +TL + A M R TR+ Sbjct: 147 PEFLVATVAVMIFAVKLRWLSALSHAGDAATLGAFIKAYAMPVLTLCCVIVAQMTRMTRA 206 Query: 195 SFIEILQEDFVRTARAKGLTETVVVIKHCLRNALIPVVTMMGLQFGFLLGGSILVEVVFN 254 + I+ L+ + A KG+ T +V++H L NA+ P+ + L +LLGG I+VE +FN Sbjct: 207 AVIDQLRSSYAEMALLKGVKRTRIVLRHALPNAIGPIANAVALSLSYLLGGVIIVESIFN 266 Query: 255 WPGMGRLLVDAVEMRDYPVIQAEILLFSLEFIFINLVVDVLYAVINPSIRFK 306 +PG+ L++DAV RD P++QA ++F ++ + L DVL V NP ++ + Sbjct: 267 YPGIATLMIDAVTTRDMPLVQACSMIFCAGYLLLVLTADVLAIVSNPRLKTR 318 >gi|300310893|ref|YP_003774985.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 324 Score = 179 bits (455), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 111/307 (36%), Positives = 179/307 (58%), Gaps = 17/307 (5%) Query: 16 LLLVAVLVFLFVHLLPGDPARLAAGPEADDKTVALVRADLGLDKPLPEQFVNFFLNAARG 75 +LL+ V+VF +H++ G+P + G + D + +LGLD+P+ Q++ F A G Sbjct: 16 VLLMTVIVFFGLHMI-GNPVDILIGQDVDQVDRLRIIQELGLDQPVWRQYLAFLNGALHG 74 Query: 76 DFGHSIRTKRPVSEEISARFWPTLWLTVVAMVWAVLFGLIIGISSAVWRNQWPDRLGMTL 135 + G+S P I R TL L A++ A++ G+ +G+ + + + RL MT Sbjct: 75 NLGNSFVYNTPAILLIFQRLPATLELACAALLLALVVGVPLGLFAGMKPDHPFSRLVMTT 134 Query: 136 AVSGISFPAFSLGILLVQVFSVKLGWLPTVGD----------------DTWLHYILPSIT 179 ++ G S P F +G++L+ FSV LGWLP+ G D W H ILP+I Sbjct: 135 SIFGFSLPTFWIGLMLIMAFSVTLGWLPSGGRGQTAELFGVQWSWLTADGWRHMILPAIN 194 Query: 180 LGAAVAAVMARFTRSSFIEILQEDFVRTARAKGLTETVVVIKHCLRNALIPVVTMMGLQF 239 L +++ R TR++ E+L DFV+ ARAKGL+ VV+ + LRN LIP+VT++GL+F Sbjct: 195 LSLFKISLVIRLTRANVREVLPMDFVKFARAKGLSPARVVLMYVLRNTLIPLVTVVGLEF 254 Query: 240 GFLLGGSILVEVVFNWPGMGRLLVDAVEMRDYPVIQAEILLFSLEFIFINLVVDVLYAVI 299 G + +++ E +F WPG G+L++D++ D PVI A +++ F+ INLVVDVLY ++ Sbjct: 255 GSTIAFAVVTESIFAWPGAGKLILDSINALDRPVIVAYLMVIVCMFVTINLVVDVLYKLL 314 Query: 300 NPSIRFK 306 +P +R + Sbjct: 315 DPRVRVE 321 >gi|300310861|ref|YP_003774953.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 324 Score = 135 bits (340), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 103/290 (35%), Positives = 157/290 (54%), Gaps = 5/290 (1%) Query: 20 AVLVFLFVHLLPGDPA-RLAAGPEADD----KTVALVRADLGLDKPLPEQFVNFFLNAAR 74 L F +LPGD A R+AAG D + VR +LGLD+P ++ Sbjct: 34 GTLCFFMTRMLPGDMAYRIAAGRYGYDMVTTEAALAVRDELGLDRPWFMALSEWWSRLLH 93 Query: 75 GDFGHSIRTKRPVSEEISARFWPTLWLTVVAMVWAVLFGLIIGISSAVWRNQWPDRLGMT 134 D G S + +PV EI+ + PTL L+++AM ++L G +G+ + + +W DR + Sbjct: 94 LDLGVSQVSSQPVLAEIAHQLGPTLRLSLLAMALSLLVGPTLGVLAGLHPGRWLDRATLA 153 Query: 135 LAVSGISFPAFSLGILLVQVFSVKLGWLPTVGDDTWLHYILPSITLGAAVAAVMARFTRS 194 L+V + P+F LG++LV +FSV+LG LP G +LP++TL +AAV R R Sbjct: 154 LSVGLRALPSFLLGLILVLLFSVQLGALPAAGHGDHGGILLPALTLALGLAAVSCRVARD 213 Query: 195 SFIEILQEDFVRTARAKGLTETVVVIKHCLRNALIPVVTMMGLQFGFLLGGSILVEVVFN 254 + +++ Q + A KGL+ + +H LRN PV +G+Q L+ G +LVE +F Sbjct: 214 AMVQVRQSAYFAFALTKGLSPAQALARHGLRNVAAPVTAYLGVQLVMLVEGVVLVETIFA 273 Query: 255 WPGMGRLLVDAVEMRDYPVIQAEILLFSLEFIFINLVVDVLYAVINPSIR 304 WPG+G LV A+ RD P+IQ L+ L F+ N +VD A ++P R Sbjct: 274 WPGIGHALVHAIFGRDVPMIQGTALVLGLMFVLFNALVDAACAFLDPRGR 323 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.330 0.144 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 871,931 Number of extensions: 34161 Number of successful extensions: 174 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 167 Number of HSP's successfully gapped: 6 Length of query: 306 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 221 Effective length of database: 1,217,395 Effective search space: 269044295 Effective search space used: 269044295 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)