BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0036.p (523 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311169|ref|YP_003775261.1| dipeptide ABC transporter perip... 1067 0.0 gi|300312481|ref|YP_003776573.1| dipeptide ABC transporter perip... 119 5e-28 gi|300310897|ref|YP_003774989.1| dipeptide ABC transporter perip... 101 1e-22 gi|300310463|ref|YP_003774555.1| dipeptide ABC transporter perip... 92 1e-19 gi|300310860|ref|YP_003774952.1| dipeptide ABC transporter perip... 70 5e-13 >gi|300311169|ref|YP_003775261.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 523 Score = 1067 bits (2759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 523/523 (100%), Positives = 523/523 (100%) Query: 1 MSTTATHKGVSAAKWLAVAALGTTLQFAAAHAFAAKTVTLAVYSTFTTLDPYDANDTLSL 60 MSTTATHKGVSAAKWLAVAALGTTLQFAAAHAFAAKTVTLAVYSTFTTLDPYDANDTLSL Sbjct: 1 MSTTATHKGVSAAKWLAVAALGTTLQFAAAHAFAAKTVTLAVYSTFTTLDPYDANDTLSL 60 Query: 61 SMAKSFYQGLFGFDKDMKLIPVLAEGYLVSKDGLEYTIRLKQGVKFQDGTVFKADAVKAV 120 SMAKSFYQGLFGFDKDMKLIPVLAEGYLVSKDGLEYTIRLKQGVKFQDGTVFKADAVKAV Sbjct: 61 SMAKSFYQGLFGFDKDMKLIPVLAEGYLVSKDGLEYTIRLKQGVKFQDGTVFKADAVKAV 120 Query: 121 FDRVTNPDNKLKRYNLFNRIAKTEILNDYTVKVVLKEPFSAFINVLAHPSAVMISPTALK 180 FDRVTNPDNKLKRYNLFNRIAKTEILNDYTVKVVLKEPFSAFINVLAHPSAVMISPTALK Sbjct: 121 FDRVTNPDNKLKRYNLFNRIAKTEILNDYTVKVVLKEPFSAFINVLAHPSAVMISPTALK 180 Query: 181 QYGNKDIAFHPVGTGPFKFVEWKQTDYVKVAKFDGYWKPGYPKVDEIIWKPVVDNNARSA 240 QYGNKDIAFHPVGTGPFKFVEWKQTDYVKVAKFDGYWKPGYPKVDEIIWKPVVDNNARSA Sbjct: 181 QYGNKDIAFHPVGTGPFKFVEWKQTDYVKVAKFDGYWKPGYPKVDEIIWKPVVDNNARSA 240 Query: 241 MMQTGEAQFTYPLPYEQADLLKSKSNLDVVAAPSIIQRYMSMNTKQKPFDNPKVREAINY 300 MMQTGEAQFTYPLPYEQADLLKSKSNLDVVAAPSIIQRYMSMNTKQKPFDNPKVREAINY Sbjct: 241 MMQTGEAQFTYPLPYEQADLLKSKSNLDVVAAPSIIQRYMSMNTKQKPFDNPKVREAINY 300 Query: 301 AINKQALVKVAFNGYAVPMDGVVPQGVDYAYKTGPWPYDVKKAKALLAEAGYPNGFETEL 360 AINKQALVKVAFNGYAVPMDGVVPQGVDYAYKTGPWPYDVKKAKALLAEAGYPNGFETEL Sbjct: 301 AINKQALVKVAFNGYAVPMDGVVPQGVDYAYKTGPWPYDVKKAKALLAEAGYPNGFETEL 360 Query: 361 WSAYTHSTAVKIVQFLQQQLAQVGIKAKIQALEAGQRVERVESWQDPATAPVRLLYIGWS 420 WSAYTHSTAVKIVQFLQQQLAQVGIKAKIQALEAGQRVERVESWQDPATAPVRLLYIGWS Sbjct: 361 WSAYTHSTAVKIVQFLQQQLAQVGIKAKIQALEAGQRVERVESWQDPATAPVRLLYIGWS 420 Query: 421 SSTGEADWALRPLLASESFPPRLYNTAYYKNDKVDADIAKALTLTERKDKEALYKDAQQE 480 SSTGEADWALRPLLASESFPPRLYNTAYYKNDKVDADIAKALTLTERKDKEALYKDAQQE Sbjct: 421 SSTGEADWALRPLLASESFPPRLYNTAYYKNDKVDADIAKALTLTERKDKEALYKDAQQE 480 Query: 481 IWKDAPWAFLVTEKLLYARNKNLKGVYVMPDQAIEFENIELVK 523 IWKDAPWAFLVTEKLLYARNKNLKGVYVMPDQAIEFENIELVK Sbjct: 481 IWKDAPWAFLVTEKLLYARNKNLKGVYVMPDQAIEFENIELVK 523 >gi|300312481|ref|YP_003776573.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 512 Score = 119 bits (298), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 95/308 (30%), Positives = 159/308 (51%), Gaps = 19/308 (6%) Query: 98 IRLKQGVKFQDGTVFKADAVKAVFDRVTNPDNKLKRYNLFNRIAKTEILNDYTVKVVLKE 157 + L+QGV+FQ+G F AD V F+ +P++K + I + L DY V++ LK Sbjct: 96 LDLRQGVQFQNGDKFSADDVVFTFNYAVSPESKAVTRQNTDWIKSVDKLADYKVRINLKG 155 Query: 158 PFSAFINVLAHPSAVMISPTA-LKQYGNKDIAFHPVGTGPFKFVEWKQTDYVKVAKFDGY 216 PF A + LA P + I P A K+ G + + P+GTGP+K V + K GY Sbjct: 156 PFPAALEYLAGP--LPIYPAAYFKKVGLEGFSKAPIGTGPYKVTSVTPGQGVTLVKNPGY 213 Query: 217 WK---PGYPKVDEIIWKPVVDNNARSAMMQTGEAQFTYPLPYEQADLLKSKSNLDVVAAP 273 +K G P + I + + D R+A + TG + + +P +QAD LK+ L V + Sbjct: 214 FKDSPQGQPTIGNIKFVVIPDPETRAAQLMTGAIDWIWRVPPDQADSLKTNPKLAVQSGE 273 Query: 274 SIIQRYMSMNTK-----QKPFDNPKVREAINYAINKQALVKVAFNGYAVPMDGVVPQ--- 325 ++ +++++T PF + +VR+A+N+AIN++ G + P+ + Sbjct: 274 TMRIGFITLDTTGTSAPNSPFKDVRVRQAVNHAINRKGYADNLMRGGSQPVYTACFRTQF 333 Query: 326 GVDYAYKTGPWPYDVKKAKALLAEAGYPNGFETELWSAYTHSTAVKIVQFLQQQLAQVGI 385 G D + + Y+ KAK LLA AGYPNGF+T++++ A I+ L +VGI Sbjct: 334 GCD-SNAAIKYDYNPAKAKELLAAAGYPNGFDTDIYAYREREIAEAII----GDLRKVGI 388 Query: 386 KAKIQALE 393 +A++ ++ Sbjct: 389 RARLHYMK 396 >gi|300310897|ref|YP_003774989.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 118/502 (23%), Positives = 217/502 (43%), Gaps = 38/502 (7%) Query: 36 KTVTLAVYSTFTTLDPYDANDTLSLSMAKSFYQGLFGFDKDMKLIPVLAEGYLVSKDGLE 95 + + +A ++LDP N S+ F+ L D + KL+P LA + + D Sbjct: 29 QNLNIAFADPLSSLDPQLNNHAGDRSVDLHFWDLLVQNDYN-KLVPGLAVSWK-NIDPKT 86 Query: 96 YTIRLKQGVKFQDGTVFKADAVKAVFDRVTNPDNKLKRYNLFNRIAKTEILND---YTVK 152 + +L+ VK+QDG F AD V + R + + + R ++ D +K Sbjct: 87 WEFKLRPNVKWQDGKPFTADDVIFSYQRARAVPGSVATFAGYLRTVESVTAKDPLTLVIK 146 Query: 153 VVLKEPFSAFINVLAHPSAVMISPTALKQYGNKDIAFHPVGTGPFKFVEWKQTDYVKVAK 212 + P H + I + + N A +GTGP+KFV + D V + + Sbjct: 147 TNIPNPDLPLNLASVHIVSKHIGEKSTTENYNSGAAV--IGTGPYKFVSYTPGDRVVMQR 204 Query: 213 FDGYWKPGYPKVDEIIWKPVVDNNARSAMMQTGEAQFTYPLPYEQADLLKSKSNLDV--- 269 D YW G P +++ ++ + + AR+A + +G+ + LK N+ V Sbjct: 205 NDDYWN-GKPLWEKVNYRYINNGAARTAALLSGDVDVIDKVSVSDLAKLKQSPNVKVYPY 263 Query: 270 ------VAAPSIIQR---YMSMNTKQKPFDNP----KVREAINYAINKQALVKVAFNGYA 316 + PS Q +++ N ++ NP +VR A++ AIN++AL+ G A Sbjct: 264 NGLRVLLIQPSFHQGPSPFITDNNGKQLDKNPLLDVRVRRAMSLAINRKALIDRILQGAA 323 Query: 317 VPMDGVVPQGV-DYAYKTGPWPYDVKKAKALLAEAGYPNGFETELWSAY-THSTAVKIVQ 374 + +P Y + P+D +AK LLA+AG+P+GF+ + + A + +Q Sbjct: 324 TEANQWMPADTFGYNPEIKNIPFDAAQAKKLLADAGFPDGFKLTIHVPNDRYPQAPETMQ 383 Query: 375 FLQQQLAQVGIKAKIQALEAGQRVERVESWQDPATAPVRLLYIGWSSSTGEADWALRPLL 434 + Q ++GIK +++ L R + + + W + TGEA +AL +L Sbjct: 384 AVAQFWTRIGIKTQVEVLPWAAYSSRANKNE------FAVSVLAWGNGTGEASYALVNVL 437 Query: 435 ASESFPPR----LYNTAYYKNDKVDADIAKALTLTERKDKEALYKDAQQEIWKDAPWAFL 490 S P+ N +Y + VD +A + + +EA+ + A + + ++ L Sbjct: 438 G--SVDPKKGIGASNWNHYSSPAVDKALADSTAEFDAAKREAILRGAAKTVSEEVGVIPL 495 Query: 491 VTEKLLYARNKNLKGVYVMPDQ 512 + ++A K LK + D+ Sbjct: 496 YHYQNIWAAKKGLKVTPISSDR 517 >gi|300310463|ref|YP_003774555.1| dipeptide ABC transporter periplasmic peptide-binding protein [Herbaspirillum seropedicae SmR1] Length = 540 Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 113/474 (23%), Positives = 196/474 (41%), Gaps = 33/474 (6%) Query: 44 STFTTLDPYDANDTLSLSMAKSFYQGLFGFDKDMKLIPVLAEGYLVSKDGLEYTIRLKQG 103 ST TLDP + + FY GL D + VLAE +++ D + +T++L++G Sbjct: 76 STADTLDPAKTAHSTDYTRVHMFYNGLTKLDGKLGPQMVLAE-EMLTNDAVTWTVKLRKG 134 Query: 104 VKFQDGT-VFKADAVKAVFDRVTNPDNKLKRYNLFNRIAKTEILNDYTVKVVLKEPFSAF 162 V F DG + AD V ++ R +P K + ++ + V++ L + Sbjct: 135 VNFHDGKPLTPADVVYSIM-RHKDPATASKVKVVADQFESVKATGPNEVQIKLTSANADL 193 Query: 163 INVLAHPSAVMISPTALKQYGNKDIAFHPVGTGPFKFVEWKQTDYVKVAKFDGYWKPGYP 222 +LA ++I + G + + P GTG FK E+ + + YWKPG P Sbjct: 194 PVILATAQFLII------RDGTTNFS-TPNGTGAFKLKEFTPGVRTIGVRNENYWKPGLP 246 Query: 223 KVDEIIWKPVVDNNARSAMMQTGEAQFTYPLPYEQADLLKSKSNLDVVAAPSIIQRYMSM 282 +DE+ + D AR + +G+ + + +K+ V+ S + M Sbjct: 247 YLDEVELFGIPDEAARVNALLSGDVHWINDVNSRSTGRVKNTPGYTVMETKSGQYTDLVM 306 Query: 283 NTKQKPFDNPKVREAINYAINKQALVKVAFNGYAV-----PMDGVVPQGVDYAYKTGPWP 337 P ++ + Y ++++ + AF GYAV P+D P Y P Sbjct: 307 RQDVAPGNSMDFTLGMKYLLDREQIKMAAFRGYAVIANDQPID---PTNRFYFAGLPQRP 363 Query: 338 YDVKKAKALLAEAGYPNGFETELWSAYTHSTAVKIVQFLQQQLAQVGIKAKIQALEAGQR 397 YD KAK L +AG G + ++ + +V + +QQ A++G+K + +R Sbjct: 364 YDPDKAKFHLGKAGVL-GSTIPIVASVAATGSVDMAVLMQQSAAKIGLKLDV------KR 416 Query: 398 VERVESWQDP-ATAPVRLLYIGWSSSTGEADWALRPLLASESFPPRLYNTAYYKNDKVDA 456 V W + PV I S AD L S++ +N + +KN + D Sbjct: 417 VPADGYWSNQWMKVPVGFGNINPRPS---ADILLTQFFKSDA----QWNESGWKNPQFDQ 469 Query: 457 DIAKALTLTERKDKEALYKDAQQEIWKDAPWAFLVTEKLLYARNKNLKGVYVMP 510 + A T+ ++A+Y D Q I + V L + +KG+ +P Sbjct: 470 LVVAARGETDFTKRKAMYADLQTMIHEKCGLGIPVFIINLEGISTKVKGIDPVP 523 >gi|300310860|ref|YP_003774952.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 80/402 (19%), Positives = 160/402 (39%), Gaps = 34/402 (8%) Query: 10 VSAAKWLAVAALGTTLQFAAAHAFAAKTVTLAVYS--TFTTLDPYDANDTLSLSMAKSFY 67 +SA+ W A A G A A L V T LDP + + Sbjct: 25 LSASPWHAALAHGDEAGHAHGDIAHAGKDMLTVVGPWELTGLDPTRSGYMFA---RMEVL 81 Query: 68 QGLFGFDKDMKLIPVLAEGYLVSKDGLEYTIRLKQGVKFQDGTVFKADAVKAVFDRVTNP 127 + L D +L P +A + VS DGL++ L+ G+++ DG+ ++ A R Sbjct: 82 ETLLEVDDAGQLQPSVASAWSVSADGLQWRFVLRSGLRYHDGSALTPASILACLQRAQAR 141 Query: 128 DNKLKRYNLFNRIAKTEILNDYTVKVVLKEPFSAFINVLAHPSAVMISPTALKQYGNKDI 187 L+ + IA + T+ VVL+ PF +L H + +++P + GN + Sbjct: 142 PGVLRLAD----IAALRV-EGQTLVVVLRRPFGPLPYLLTHYTTQILAPASFDAQGNV-V 195 Query: 188 AFHPVGTGPFKF--VEWKQTDYVKVAKFDGYWKPGYPKVDEIIWK----PVVDNNARSAM 241 A +G+GPF+ + Q V+ V +++ + V R+ + Sbjct: 196 AI--IGSGPFRIRSIALPQQFEVERVAGSVSGSGAGSDVGKVVQRARYISVSRAETRTLL 253 Query: 242 MQTGEAQFTYPLPYEQADLLKSKSNLDVVAAPSIIQRYMSMNTKQKPFDNPKVREAINYA 301 +Q+G+A + L L+ +++A + +N + +VR AI+ Sbjct: 254 VQSGQADLAFSLDPPSIRALQDSPRASLLSAMLPRTTLLKLNAGHPLLADVRVRRAISLC 313 Query: 302 INKQALVKVAFNGYAVPMDGVVPQGVD--YAYKTGPWPYDVKKAKALLAEAGYPNGFETE 359 I ++ + + + + P + + P ++++A++LL +AG+ G + Sbjct: 314 IEREGIARALLRDPDLGATQLFPPSLARWHDAALAPLRTNLQQARSLLDQAGWRPGSDG- 372 Query: 360 LWSAYTHSTAVKIVQF------------LQQQLAQVGIKAKI 389 + A+ + F LQ+++ Q+G+ ++ Sbjct: 373 VRRRDGQRMALNLTTFVDRPELPLIATALQEEMRQIGMAVRV 414 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,572,666 Number of extensions: 63321 Number of successful extensions: 166 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 155 Number of HSP's successfully gapped: 5 Length of query: 523 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 433 Effective length of database: 1,193,720 Effective search space: 516880760 Effective search space used: 516880760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)