BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0033.p (331 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311166|ref|YP_003775258.1| transcription regulator protein... 655 0.0 gi|300311738|ref|YP_003775830.1| RpiR family transcription regul... 79 6e-16 gi|300312817|ref|YP_003776909.1| transcription regulator protein... 68 9e-13 >gi|300311166|ref|YP_003775258.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/327 (99%), Positives = 327/327 (100%) Query: 1 VTQQQKNISLQGAGAVAQAVGKLYAQLSKSHRKTADYVLGNPFRAATMTIDELSEAAGIS 60 +TQQQKNISLQGAGAVAQAVGKLYAQLSKSHRKTADYVLGNPFRAATMTIDELSEAAGIS Sbjct: 1 MTQQQKNISLQGAGAVAQAVGKLYAQLSKSHRKTADYVLGNPFRAATMTIDELSEAAGIS 60 Query: 61 VATANRFAHALGFDGYASFRAALVSDFATTLAPVEKLRNEVQRAATSAEIMAAAFDSDIA 120 VATANRFAHALGFDGYASFRAALVSDFATTLAPVEKLRNEVQRAATSAEIMAAAFDSDIA Sbjct: 61 VATANRFAHALGFDGYASFRAALVSDFATTLAPVEKLRNEVQRAATSAEIMAAAFDSDIA 120 Query: 121 NIEATRRMLTASDCEAAVDMILAAERIFITGFGASAYLAGLMAHALEPYVRTVSSVALAG 180 NIEATRRMLTASDCEAAVDMILAAERIFITGFGASAYLAGLMAHALEPYVRTVSSVALAG Sbjct: 121 NIEATRRMLTASDCEAAVDMILAAERIFITGFGASAYLAGLMAHALEPYVRTVSSVALAG 180 Query: 181 GPSQAGRQFFKLDNRDLVIPMVFPRYAADTVWLTQRAVEKGARILAITDSPGSPLVPLAD 240 GPSQAGRQFFKLDNRDLVIPMVFPRYAADTVWLTQRAVEKGARILAITDSPGSPLVPLAD Sbjct: 181 GPSQAGRQFFKLDNRDLVIPMVFPRYAADTVWLTQRAVEKGARILAITDSPGSPLVPLAD 240 Query: 241 VTIYAQTDRKLSPTSDAAALILIQALCDAVAHRARRSVQAASQMAEFVLPWLYLPQQQQR 300 VTIYAQTDRKLSPTSDAAALILIQALCDAVAHRARRSVQAASQMAEFVLPWLYLPQQQQR Sbjct: 241 VTIYAQTDRKLSPTSDAAALILIQALCDAVAHRARRSVQAASQMAEFVLPWLYLPQQQQR 300 Query: 301 PVMSKAAGRAKSAKTAKDVSTRRKTKA 327 PV+SKAAGRAK+AKTAKDVSTRRKTKA Sbjct: 301 PVVSKAAGRAKTAKTAKDVSTRRKTKA 327 >gi|300311738|ref|YP_003775830.1| RpiR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 281 Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 72/265 (27%), Positives = 116/265 (43%), Gaps = 9/265 (3%) Query: 24 YAQLSKSHRKTADYVLGNPFRAATMTIDELSEAAGISVATANRFAHALGFDGYASFRAAL 83 Y LS+ + A YV + I +++E + + RFA GF G++ +A Sbjct: 8 YHSLSRQLKVIATYVEQHKTSLMLERISDIAEQCQVQPSAIVRFAKHFGFSGFSEMQAVF 67 Query: 84 VSDFATTLAPVE----KLRNEVQRA---ATSAEIMAAAFDSDIANIEATRRMLTASDCEA 136 + P ++RN +Q TS + S A ++ EA Sbjct: 68 REAYTAQAIPSRNYQRRIRNLIQSKPTRVTSGALAHEFIQSSRAGLDELLAGFDEEQFEA 127 Query: 137 AVDMILAAERIFITGFGASAYLAGLMAHALEPYVRTVSSVALAGGPSQAGRQFFKLDNRD 196 AV ++L AE I++ G S +A +A+AL+ + V ++ AGG + + +D D Sbjct: 128 AVKLLLKAENIYVIGVRRSFPIANHLAYALQHTNKRVHLISGAGGMFR--EEVRSIDKHD 185 Query: 197 LVIPMVFPRYAADTVWLTQRAVEKGARILAITDSPGSPLVPLADVTIYAQTDRKLSPTSD 256 ++I + F Y +T + A + AR L ITDS SPL A V + + S S Sbjct: 186 VLIAISFTPYGQETQACVRLAHHRQARTLVITDSQLSPLARHASVLLKVKESSAFSFRSL 245 Query: 257 AAALILIQALCDAVAHRARRSVQAA 281 A+ L QAL A+A+R V+ A Sbjct: 246 TNAMCLSQALFIALAYRMELDVEEA 270 >gi|300312817|ref|YP_003776909.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 293 Score = 68.2 bits (165), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 111/242 (45%), Gaps = 15/242 (6%) Query: 35 ADYVLGNPFRAATMTIDELSEAAGISVATANRFAHALGFDGYASFRAALVSDFATTLAPV 94 A ++L NP A T+ LS+ A + +T R A LGF G+A RA V A Sbjct: 33 AAFLLDNPGEVAVSTMRALSQKAQVQPSTFVRLAQHLGFAGWAELRALFVERLAGEPKAY 92 Query: 95 EKLRNEVQRAATSAEIMAAAFDSDIANIEATR-----RMLTASDCEAAVDMILAAERIFI 149 + R + S +++A F + AN++A+ RML A+ +L A + I Sbjct: 93 AFKAKSIVRRSNSDKLVAELFTAQRANLDASEPKSADRMLGAARA------LLKAHHVHI 146 Query: 150 TGFGASAYLAGLMAHALEPYVRTVSSVALA-GGPSQAGRQFFKLDNRDLVIPMVFPRYAA 208 GF A A+ + H L RT SV+L G + + D VI + F Y+ Sbjct: 147 AGFRA-AFSISFLLHYLYRLFRT--SVSLVRGSEGSIELELRAIAAHDAVIVVSFAPYST 203 Query: 209 DTVWLTQRAVEKGARILAITDSPGSPLVPLADVTIYAQTDRKLSPTSDAAALILIQALCD 268 + V + + A + GA+++A+TDS +P+ AD I + S AAA + ++L + Sbjct: 204 EAVRVAEAAKQAGAKLIALTDSAVAPIALKADHCILFSHESPSFFPSMAAATAIAESLIE 263 Query: 269 AV 270 V Sbjct: 264 LV 265 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.130 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 884,949 Number of extensions: 34361 Number of successful extensions: 161 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 158 Number of HSP's successfully gapped: 6 Length of query: 331 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 245 Effective length of database: 1,212,660 Effective search space: 297101700 Effective search space used: 297101700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)