BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0024.p (375 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311158|ref|YP_003775250.1| multidrug ABC transporter perme... 749 0.0 gi|300311268|ref|YP_003775360.1| multidrug ABC transporter perme... 416 e-117 gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPas... 92 8e-20 gi|300311157|ref|YP_003775249.1| multidrug ABC transporter ATPas... 85 1e-17 >gi|300311158|ref|YP_003775250.1| multidrug ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 375 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/375 (99%), Positives = 373/375 (99%) Query: 1 MRNSWANIYRLGIKELWSLLRDPAMLVLIAYTFSLSIYVAATAMPESLHHAAIAIVDNDG 60 MRNSWANIYRLGIKELWSLLRDPAMLVLIAYTFSLSIYVAATAMPESLHHAAIAIVDND Sbjct: 1 MRNSWANIYRLGIKELWSLLRDPAMLVLIAYTFSLSIYVAATAMPESLHHAAIAIVDNDS 60 Query: 61 SPLSARIAASFYPPHFKVARLVTARQADAGLDDGDYTFVLDIPADFQRDVLAARAPAVQL 120 SPLSARIAASFYPPHFKVARLVTARQADAGLDDGDYTFVLDIPADFQRDVLAARAPAVQL Sbjct: 61 SPLSARIAASFYPPHFKVARLVTARQADAGLDDGDYTFVLDIPADFQRDVLAARAPAVQL 120 Query: 121 NVDATRMSQAFTGNSYIQQMVTNEVAQFVQRQEGGASAPVNLALRMRFNPNLEQSWFGSL 180 NVDATRMSQAFTGNSYIQQMVTNEVAQFVQRQEGGASAPVNLALRMRFNPNLEQSWFGSL Sbjct: 121 NVDATRMSQAFTGNSYIQQMVTNEVAQFVQRQEGGASAPVNLALRMRFNPNLEQSWFGSL 180 Query: 181 MEIINNVTMLSIILTGAALIREREHGTIEHLLVMPVTPAEIMLAKVCSMGVVVALAALAS 240 MEIINNVTMLSIILTGAALIREREHGTIEHLLVMPVTPAEIMLAKV SMGVVVALAALAS Sbjct: 181 MEIINNVTMLSIILTGAALIREREHGTIEHLLVMPVTPAEIMLAKVWSMGVVVALAALAS 240 Query: 241 LLLIVRGALHVPIEGSVALFMLVTCLHLFATTSMGIFMATLARSMPQFGMLTVLVLLPLQ 300 LLLIVRGALHVPIEGSVALFMLVTCLHLFATTSMGIFMATLARSMPQFGMLTVLVLLPLQ Sbjct: 241 LLLIVRGALHVPIEGSVALFMLVTCLHLFATTSMGIFMATLARSMPQFGMLTVLVLLPLQ 300 Query: 301 LLSGGSTPRESMPVLVQDIMLAAPTTHFVAAGQAILYRGAGLEVIWPQLLAIFGIGAVLF 360 LLSGGSTPRESMPVLVQDIMLAAPTTHFVAAGQAILYRGAGLEVIWPQLLAIFGIGAVLF Sbjct: 301 LLSGGSTPRESMPVLVQDIMLAAPTTHFVAAGQAILYRGAGLEVIWPQLLAIFGIGAVLF 360 Query: 361 MAALGRFRKTISQMA 375 MAALGRFRKTISQMA Sbjct: 361 MAALGRFRKTISQMA 375 >gi|300311268|ref|YP_003775360.1| multidrug ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 375 Score = 416 bits (1069), Expect = e-117, Method: Compositional matrix adjust. Identities = 215/374 (57%), Positives = 281/374 (75%) Query: 1 MRNSWANIYRLGIKELWSLLRDPAMLVLIAYTFSLSIYVAATAMPESLHHAAIAIVDNDG 60 MR AN+++L +KELWSL RD ML LI +F+ +Y AA+A+P++L HAAIAIVD D Sbjct: 1 MRQGLANLWQLTLKELWSLWRDRVMLCLIVLSFTGMVYSAASAIPDTLSHAAIAIVDEDD 60 Query: 61 SPLSARIAASFYPPHFKVARLVTARQADAGLDDGDYTFVLDIPADFQRDVLAARAPAVQL 120 SPLS R+AA+F P F + ++ + DAGLD G Y FVL PA Q + + VQL Sbjct: 61 SPLSQRLAAAFMAPQFSPPQRISVAEMDAGLDAGRYVFVLHFPAGLQSKLQTGKPAEVQL 120 Query: 121 NVDATRMSQAFTGNSYIQQMVTNEVAQFVQRQEGGASAPVNLALRMRFNPNLEQSWFGSL 180 NVDATRM QA++G++Y++Q++ E+ +F+Q+++ LALR RFNP LE++WF S+ Sbjct: 121 NVDATRMDQAYSGSAYVEQILQLEIRRFLQKRQDEPREAATLALRARFNPALEKTWFSSV 180 Query: 181 MEIINNVTMLSIILTGAALIREREHGTIEHLLVMPVTPAEIMLAKVCSMGVVVALAALAS 240 ++II+N+TML+IIL GAALIREREHGTIEHLLVMPV+P +IM AKV +MG VV +AA S Sbjct: 181 LQIIDNITMLAIILAGAALIREREHGTIEHLLVMPVSPVQIMGAKVLAMGGVVLVAATLS 240 Query: 241 LLLIVRGALHVPIEGSVALFMLVTCLHLFATTSMGIFMATLARSMPQFGMLTVLVLLPLQ 300 L +VRG L VPIEGSV LF+ L LFA T++GI +AT+ARSMPQFG+L +LVLLPL Sbjct: 241 LHGVVRGLLDVPIEGSVGLFLFGAALSLFANTALGISLATVARSMPQFGLLLMLVLLPLI 300 Query: 301 LLSGGSTPRESMPVLVQDIMLAAPTTHFVAAGQAILYRGAGLEVIWPQLLAIFGIGAVLF 360 LLSGG+TPRESMPVL+Q +MLAAP+TH V G+ +LYRGAGLE++WPQLLA+F IG +L Sbjct: 301 LLSGGATPRESMPVLIQYLMLAAPSTHLVRLGEGVLYRGAGLEMVWPQLLALFLIGNILL 360 Query: 361 MAALGRFRKTISQM 374 +L R R ++QM Sbjct: 361 WVSLRRLRTMLTQM 374 >gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 913 Score = 91.7 bits (226), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 96/349 (27%), Positives = 157/349 (44%), Gaps = 17/349 (4%) Query: 4 SWANIYRLGIKELWSLLRDPAMLVLIAYTFSLSIYVAATAMPESLHHAAIAIVDNDGSPL 63 SW + +E L RDP + L ++V + ++ A++D D S Sbjct: 542 SWQRMLSYAWREALELRRDPVRATMALLGSLLLMFVIGYGISTDVNGLPYAVLDQDQSSA 601 Query: 64 SARIAASFY-PPHFKV-ARLVTARQADAGLDDGDYTFVLDIPADFQRDVLAARAPAVQLN 121 S AA+ P+F+ A L Q D + +G+ T ++IP+ F R + A R + Sbjct: 602 SRDYAAALRASPYFQERAPLQGPAQLDKRMRNGELTLAIEIPSGFGRRLAAGRQVEIGAW 661 Query: 122 VDATRMSQAFTGNSYIQQMVTNEVAQFVQRQEGGASAP-VNLALRMRFNPNLEQSWFGSL 180 ++ S+A T +Y+Q M + + Q QR +G P + + R+R+N +L +S L Sbjct: 662 INGAMPSRAETVQAYVQGMHQHWLEQRQQRLQGRPQTPALEIQTRLRYNADL-RSLPAIL 720 Query: 181 MEIINNVTMLSIILTGA-ALIREREHGTIEHLLVMPVTPAEIMLAKVCSMGVVVALAALA 239 +I + + + A A++RE+E G I + V PVT E + K +AL Sbjct: 721 PAVIPLLLLTLPAMLTALAVVREKELGAIINFYVTPVTRLEFLCGKQLP---YIALGMFN 777 Query: 240 SLLLIVRGA--LHVPIEGSVALFMLVTCLHLFATTSMGIFMATLARSMPQFGMLTVL-VL 296 LL+ + L +P++GS A L T ++L T MG+ + L RS +L L Sbjct: 778 FLLMSMAAVTLLELPVKGSYAALALATLVYLVIATGMGLVASALTRSQIAAMFAALLGTL 837 Query: 297 LPLQLLSGGSTP---RESMPVLVQDIMLAAPTTHFVAAGQAILYRGAGL 342 +P +G +TP E M LV DI P TH + + + GL Sbjct: 838 VPATQFAGMTTPVSALEGMGRLVGDIH---PATHMFLISRGVYVKALGL 883 >gi|300311157|ref|YP_003775249.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 923 Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 84/375 (22%), Positives = 164/375 (43%), Gaps = 22/375 (5%) Query: 2 RNSWANIYRLGIKELWSLLRDPAMLVLIAYTFSLSIYVAATAMPESLHHAAIAIVDNDGS 61 R S +E L RDP L ++ +++ + + + + A++D D + Sbjct: 550 RTSLGRALSYSQRESLELRRDPVRATLALLGTAILMFIIGYGINLDVENLSYAVLDRDQT 609 Query: 62 PLSARIAASFYPPHFKVAR--LVTARQADAGLDDGDYTFVLDIPADFQRDVLAARAPAVQ 119 LS A + + + + + ++ D + GD + ++IP F RD+ V Sbjct: 610 GLSQNYALNLSGSRYFIEKPPISDYQELDRRMRSGDISLAIEIPPGFARDIARGHTVEVG 669 Query: 120 LNVDATRMSQAFTGNSYIQQMVTNEVAQFVQRQEGGASA-PVNLALRMRFNPNLEQSWFG 178 VD ++A T Y+Q M +A + G + A P + R R+NP+++ Sbjct: 670 AWVDGAMPTRAETVRGYVQGMHQLWLADMATHRLGQSLAMPARIETRYRYNPDVK----- 724 Query: 179 SLMEIINNVT-----MLSIILTGAALIREREHGTIEHLLVMPVTPAEIMLAKVCSMGVVV 233 SL ++ + M+ +LT +++RE+E G+I +L V PV+ E +L K +++ Sbjct: 725 SLPAMVPAIIPLLLMMIPAMLTALSVVREKELGSILNLYVTPVSRTEFLLGKQLPY-LLL 783 Query: 234 ALAALASLLLIVRGALHVPIEGSVALFMLVTCLHLFATTSMGIFMATLARSMPQFGMLTV 293 + A L L+ VP++GS+ L + + +T G+ +T S +T+ Sbjct: 784 GMLNFAMLTLLAVTVFGVPVKGSLLTLTLAALVFVICSTGFGLLASTFTNSQIAALFVTM 843 Query: 294 L-VLLPLQLLSGGSTPRESMPVLVQDIMLAAPTTHFVAAGQAILYRGAGLEVI----WPQ 348 + ++P +G P S+ + I P THF+ + + + L+ + WP Sbjct: 844 IGTIIPCVQFAGLLNPVSSLEGMGALIGQVYPATHFLTISRGVFSKALALDDLASSFWPL 903 Query: 349 LLA---IFGIGAVLF 360 ++A I G+ +L Sbjct: 904 VVAAPVILGLSVLLL 918 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,041,507 Number of extensions: 38995 Number of successful extensions: 168 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 162 Number of HSP's successfully gapped: 4 Length of query: 375 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 288 Effective length of database: 1,207,925 Effective search space: 347882400 Effective search space used: 347882400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)