BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0023.p (923 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311157|ref|YP_003775249.1| multidrug ABC transporter ATPas... 1863 0.0 gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPas... 1158 0.0 gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [H... 122 1e-28 gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase... 120 6e-28 gi|300310367|ref|YP_003774459.1| sugar ABC transporter ATPase [H... 114 4e-26 >gi|300311157|ref|YP_003775249.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 923 Score = 1863 bits (4826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 920/923 (99%), Positives = 921/923 (99%) Query: 1 MKTLPGGACVARLQRVALRYGKTVALDAVSLDIPAGCMVGLIGPDGVGKSSLLSLVAGAR 60 M TLPGGACVARLQRVALRYGKTVALDAVSLDIPAGCMVGLIGPDGVGKSSLLSLVAGAR Sbjct: 1 MNTLPGGACVARLQRVALRYGKTVALDAVSLDIPAGCMVGLIGPDGVGKSSLLSLVAGAR 60 Query: 61 ALQQGELAVLGGDMRQQRHRQQACPRIAYMPQGLGKNLYPTLSVEENLQFFGRLFGQDAG 120 ALQQGELAVLGGDMRQQRHRQQACPRIAYMPQGLGKNLYPTLSVEENLQFFGRLFGQDA Sbjct: 61 ALQQGELAVLGGDMRQQRHRQQACPRIAYMPQGLGKNLYPTLSVEENLQFFGRLFGQDAS 120 Query: 121 ERRRRIDELTTSTGLDKFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLS 180 ERRRRIDELTTSTGLDKFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLS Sbjct: 121 ERRRRIDELTTSTGLDKFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLS 180 Query: 181 RAQFWDLIAHIRQQRAGMSVIVATAYMEEADRFDWLVAMDEGRVLATGTPVQLHQRTGTA 240 RAQFWDLIAHIRQQRAGMSVIVATAYMEEADRFDWLVAMDEGRVLATGTPVQLHQRTGTA Sbjct: 181 RAQFWDLIAHIRQQRAGMSVIVATAYMEEADRFDWLVAMDEGRVLATGTPVQLHQRTGTA 240 Query: 241 SLEEAFIALLPEEKRRGHQTVQVTPLDDTIDSGVAIEAKGLTMRFGDFLAVDHVDFRIRR 300 SLEEAFIALLPEEKRRGHQTVQVTPLDDTIDSGVAIEAKGLTMRFGDFLAVDHVDFRIRR Sbjct: 241 SLEEAFIALLPEEKRRGHQTVQVTPLDDTIDSGVAIEAKGLTMRFGDFLAVDHVDFRIRR 300 Query: 301 GEIFGFLGSNGCGKSTTMKMLTGLLPASEGQAWLFGREVDPRDMATRARVGYMSQAFSLY 360 GEIFGFLGSNGCGKSTTMKMLTGLLPASEGQAWLFGRE+DPRDMATRARVGYMSQAFSLY Sbjct: 301 GEIFGFLGSNGCGKSTTMKMLTGLLPASEGQAWLFGREIDPRDMATRARVGYMSQAFSLY 360 Query: 361 GELSVRQNLVLHARLYRVPAEQIAARTDEMARRFGLLDVMDSLPESLPLGIRQRLSLAVA 420 GELSVRQNLVLHARLYRVPAEQIAARTDEMARRFGLLDVMDSLPESLPLGIRQRLSLAVA Sbjct: 361 GELSVRQNLVLHARLYRVPAEQIAARTDEMARRFGLLDVMDSLPESLPLGIRQRLSLAVA 420 Query: 421 MVHKPELLILDEPTSGVDPIARDLFWQLMIGLARQDQVTIFISTHFMNEALRCDRISLMH 480 MVHKPELLILDEPTSGVDPIARDLFWQLMIGLARQDQVTIFISTHFMNEALRCDRISLMH Sbjct: 421 MVHKPELLILDEPTSGVDPIARDLFWQLMIGLARQDQVTIFISTHFMNEALRCDRISLMH 480 Query: 481 AGRVLVSATPQALMQQRGAQTLEQAFIGYLEEAAGKGGSAAATHSAVAVAVAPPAASPAA 540 AGRVLVSATPQALMQQRGAQTLEQAFIGYLEEAAGKGGSAAATHSAVAVAVAPPAASPAA Sbjct: 481 AGRVLVSATPQALMQQRGAQTLEQAFIGYLEEAAGKGGSAAATHSAVAVAVAPPAASPAA 540 Query: 541 SPAPRLSRWRTSLGRALSYSQRESLELRRDPVRATLALLGTAILMFIIGYGINLDVENLS 600 SPAPRLSRWRTSLGRALSYSQRESLELRRDPVRATLALLGTAILMFIIGYGINLDVENLS Sbjct: 541 SPAPRLSRWRTSLGRALSYSQRESLELRRDPVRATLALLGTAILMFIIGYGINLDVENLS 600 Query: 601 YAVLDRDQTGLSQNYALNLSGSRYFIEKPPISDYQELDRRMRSGDISLAIEIPPGFARDI 660 YAVLDRDQTGLSQNYALNLSGSRYFIEKPPISDYQELDRRMRSGDISLAIEIPPGFARDI Sbjct: 601 YAVLDRDQTGLSQNYALNLSGSRYFIEKPPISDYQELDRRMRSGDISLAIEIPPGFARDI 660 Query: 661 ARGHTVEVGAWVDGAMPTRAETVRGYVQGMHQLWLADMATHRLGQSLAMPARIETRYRYN 720 ARGHTVEVGAWVDGAMPTRAETVRGYVQGMHQLWLADMATHRLGQSLAMPARIETRYRYN Sbjct: 661 ARGHTVEVGAWVDGAMPTRAETVRGYVQGMHQLWLADMATHRLGQSLAMPARIETRYRYN 720 Query: 721 PDVKSLPAMVPAIIPLLLMMIPAMLTALSVVREKELGSILNLYVTPVSRTEFLLGKQLPY 780 PDVKSLPAMVPAIIPLLLMMIPAMLTALSVVREKELGSILNLYVTPVSRTEFLLGKQLPY Sbjct: 721 PDVKSLPAMVPAIIPLLLMMIPAMLTALSVVREKELGSILNLYVTPVSRTEFLLGKQLPY 780 Query: 781 LLLGMLNFAMLTLLAVTVFGVPVKGSLLTLTLAALVFVICSTGFGLLASTFTNSQIAALF 840 LLLGMLNFAMLTLLAVTVFGVPVKGSLLTLTLAALVFVICSTGFGLLASTFTNSQIAALF Sbjct: 781 LLLGMLNFAMLTLLAVTVFGVPVKGSLLTLTLAALVFVICSTGFGLLASTFTNSQIAALF 840 Query: 841 VTMIGTIIPCVQFAGLLNPVSSLEGMGALIGQVYPATHFLTISRGVFSKALALDDLASSF 900 VTMIGTIIPCVQFAGLLNPVSSLEGMGALIGQVYPATHFLTISRGVFSKALALDDLASSF Sbjct: 841 VTMIGTIIPCVQFAGLLNPVSSLEGMGALIGQVYPATHFLTISRGVFSKALALDDLASSF 900 Query: 901 WPLVVAAPVILGLSVLLLKKQER 923 WPLVVAAPVILGLSVLLLKKQER Sbjct: 901 WPLVVAAPVILGLSVLLLKKQER 923 >gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 913 Score = 1158 bits (2995), Expect = 0.0, Method: Compositional matrix adjust. Identities = 589/916 (64%), Positives = 715/916 (78%), Gaps = 11/916 (1%) Query: 9 CVARLQRVALRYGKTVALDAVSLDIPAGCMVGLIGPDGVGKSSLLSLVAGARALQQGELA 68 C AR+ V+ YGK AL V LDIP GCM GLIGPDGVGKS+LLSL+AGAR ++ G + Sbjct: 6 CAARVHDVSHSYGKNPALSHVELDIPGGCMAGLIGPDGVGKSTLLSLIAGARRIRAGRID 65 Query: 69 VLGGDMRQQRHRQQACPRIAYMPQGLGKNLYPTLSVEENLQFFGRLFGQDAGERRRRIDE 128 VLGGD+ Q HR P IAYMPQGLGKNLYPTLSVEENLQF RLFGQDA ERR+RID+ Sbjct: 66 VLGGDIGQAAHRDAVGPCIAYMPQGLGKNLYPTLSVEENLQFIARLFGQDAQERRQRIDD 125 Query: 129 LTTSTGLDKFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQFWDLI 188 LT STGL FLARPAG+LSGGMKQKL LCC+LIHDPDLLILDEPTTGVDPL+RAQFW+LI Sbjct: 126 LTHSTGLQPFLARPAGQLSGGMKQKLSLCCALIHDPDLLILDEPTTGVDPLARAQFWELI 185 Query: 189 AHIRQQRAGMSVIVATAYMEEADRFDWLVAMDEGRVLATGTPVQLHQRTGTASLEEAFIA 248 A +RQ+ GMSVIVATAYM+EA FDWL MD+G+VLATGTP L RTG +SLE AFIA Sbjct: 186 ARLRQRHPGMSVIVATAYMDEAQAFDWLAVMDQGQVLATGTPAALLARTGASSLERAFIA 245 Query: 249 LLPEEKRRGHQTVQVTPLDDTIDSGVAIEAKGLTMRFGD-FLAVDHVDFRIRRGEIFGFL 307 LLP ++ GH+ + + PL+ D +AIEA+ L+MRF D F AVDHV FRIRRGEIFGFL Sbjct: 246 LLPAHRKAGHEALSIPPLETHADD-IAIEAENLSMRFADGFTAVDHVSFRIRRGEIFGFL 304 Query: 308 GSNGCGKSTTMKMLTGLLPASEGQAWLFGREVDPRDMATRARVGYMSQAFSLYGELSVRQ 367 GSNGCGK+TTMKMLTGLLPAS G+A LFG+E+DPRD+ R RVGYMSQ+FSLY +LSVRQ Sbjct: 305 GSNGCGKTTTMKMLTGLLPASSGRARLFGQEIDPRDVCLRKRVGYMSQSFSLYKDLSVRQ 364 Query: 368 NLVLHARLYRVPAEQIAARTDEMARRFGLLDVMDSLPESLPLGIRQRLSLAVAMVHKPEL 427 NL LHARL+ +PA QI R EMARRF L+ VMDSL LP+GIRQRLSLAVA +H PE+ Sbjct: 365 NLALHARLFHLPAAQIGPRVAEMARRFALMPVMDSLAADLPMGIRQRLSLAVATIHGPEI 424 Query: 428 LILDEPTSGVDPIARDLFWQLMIGLARQDQVTIFISTHFMNEALRCDRISLMHAGRVLVS 487 LILDEPTSGVDP+ARD FWQL++ L+R+D+VTIF+STHFMNEALRCDR+S+MHAG+VL S Sbjct: 425 LILDEPTSGVDPVARDHFWQLLVTLSRRDKVTIFLSTHFMNEALRCDRMSMMHAGKVLDS 484 Query: 488 ATPQALMQQRGAQTLEQAFIGYLEEAAGKGGSAAATHSAVAVAVAPPAASPAASPAPRLS 547 TP ALM +RGA TLEQAFIGYL +A G+ A S A+ P S PAP S Sbjct: 485 DTPAALMHKRGAATLEQAFIGYLVQA-GQDEKHAPGQSRQTAAMPPGLPS---HPAPPTS 540 Query: 548 -RWRTSLGRALSYSQRESLELRRDPVRATLALLGTAILMFIIGYGINLDVENLSYAVLDR 606 W+ R LSY+ RE+LELRRDPVRAT+ALLG+ +LMF+IGYGI+ DV L YAVLD+ Sbjct: 541 FSWQ----RMLSYAWREALELRRDPVRATMALLGSLLLMFVIGYGISTDVNGLPYAVLDQ 596 Query: 607 DQTGLSQNYALNLSGSRYFIEKPPISDYQELDRRMRSGDISLAIEIPPGFARDIARGHTV 666 DQ+ S++YA L S YF E+ P+ +LD+RMR+G+++LAIEIP GF R +A G V Sbjct: 597 DQSSASRDYAAALRASPYFQERAPLQGPAQLDKRMRNGELTLAIEIPSGFGRRLAAGRQV 656 Query: 667 EVGAWVDGAMPTRAETVRGYVQGMHQLWLADMATHRLGQSLAMPARIETRYRYNPDVKSL 726 E+GAW++GAMP+RAETV+ YVQGMHQ WL G+ I+TR RYN D++SL Sbjct: 657 EIGAWINGAMPSRAETVQAYVQGMHQHWLEQRQQRLQGRPQTPALEIQTRLRYNADLRSL 716 Query: 727 PAMVPAIIPLLLMMIPAMLTALSVVREKELGSILNLYVTPVSRTEFLLGKQLPYLLLGML 786 PA++PA+IPLLL+ +PAMLTAL+VVREKELG+I+N YVTPV+R EFL GKQLPY+ LGM Sbjct: 717 PAILPAVIPLLLLTLPAMLTALAVVREKELGAIINFYVTPVTRLEFLCGKQLPYIALGMF 776 Query: 787 NFAMLTLLAVTVFGVPVKGSLLTLTLAALVFVICSTGFGLLASTFTNSQIAALFVTMIGT 846 NF ++++ AVT+ +PVKGS L LA LV+++ +TG GL+AS T SQIAA+F ++GT Sbjct: 777 NFLLMSMAAVTLLELPVKGSYAALALATLVYLVIATGMGLVASALTRSQIAAMFAALLGT 836 Query: 847 IIPCVQFAGLLNPVSSLEGMGALIGQVYPATHFLTISRGVFSKALALDDLASSFWPLVVA 906 ++P QFAG+ PVS+LEGMG L+G ++PATH ISRGV+ KAL L D+A+S L+ Sbjct: 837 LVPATQFAGMTTPVSALEGMGRLVGDIHPATHMFLISRGVYVKALGLADVATSLALLLAT 896 Query: 907 APVILGLSVLLLKKQE 922 PV++GL+VL+L+KQE Sbjct: 897 LPVVMGLAVLMLRKQE 912 >gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 137/512 (26%), Positives = 238/512 (46%), Gaps = 50/512 (9%) Query: 10 VARLQRVALRYGKTVALDAVSLDIPAGCMVGLIGPDGVGKSSLLSLVAGARALQQGELAV 69 V L+ V R+ +ALD ++ AG + L+G +G GKS+L+ +++G G++ + Sbjct: 22 VIALRNVCKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILL 81 Query: 70 LGGDMRQQRHRQQACPRIAYMPQGLGKNLYPTLSVEENLQFFGR-------LFGQDAGER 122 G + RQ I + Q L NL LS +N+ F GR LF D E Sbjct: 82 DGKPVEITEPRQAQALGIGIIHQEL--NLMNHLSAAQNI-FIGREPRKAMGLF-IDEDEL 137 Query: 123 RRRIDELTTSTGLDKFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRA 182 R+ + LD + P G+L+ +Q + + +L D +LI+DEPT ++ A Sbjct: 138 NRQAAAIFARMRLDMDPSTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIA 197 Query: 183 QFWDLIAHIRQQRAGMSVIVATAYMEEADRF-DWLVAMDEGRVLATGTPVQLHQRTGTAS 241 + + +I ++ Q G+ ++ + M+E + D + M +G+ +AT P+Q + Sbjct: 198 ELFRIIRDLQAQ--GVGIVYISHKMDELRQIADRVSVMRDGKYIAT-VPMQ-------ET 247 Query: 242 LEEAFIALLPEEKRRGHQTVQVTPLDDTIDSGVAIEAKGLTMRFGDFLAVDHVDFRIRRG 301 + I+++ G Q ++ P DT + V +E +GL A+ V F +R+G Sbjct: 248 SMDTIISMMVGRALDGEQ--RIPP--DTSRNDVVLEVRGLNR----GRAIRDVSFTLRKG 299 Query: 302 EIFGFLGSNGCGKSTTMKMLTGLLPASEGQAWLFGREV---DPRDMATRARVGYMSQ--- 355 EI GF G G G++ + + G P G+ + G + P D +GY+S+ Sbjct: 300 EILGFAGLMGAGRTEVARAIFGADPLEAGEIIIHGGKAVIKSPADAVAHG-IGYLSEDRK 358 Query: 356 AFSLYGELSVRQNLVLHA--RLYRVP-AEQIAARTDEMARRFGLLDVMDSLPESLPL--- 409 F L + V+ N+ L + R RV +Q A R L S+ + L Sbjct: 359 HFGLAVGMDVQANIALSSMGRFTRVGFMDQRAIREAAQMYVRQLAIKTPSVEQQARLLSG 418 Query: 410 GIRQRLSLAVAMVHKPELLILDEPTSGVDPIARDLFWQLMIGLARQDQVTIFISTHFMNE 469 G +Q++ +A ++ ++L DEPT G+D A+ ++L+ LA Q + + IS+ + E Sbjct: 419 GNQQKIVIAKWLLRDCDILFFDEPTRGIDVGAKSEIYKLLDALAEQGKAIVMISSE-LPE 477 Query: 470 ALR-CDRISLMHAGRVL-----VSATPQALMQ 495 LR R+ +M GR+ AT + +MQ Sbjct: 478 VLRMSHRVLVMCEGRITGELARADATQEKIMQ 509 Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 119/247 (48%), Gaps = 25/247 (10%) Query: 276 IEAKGLTMRFGDFLAVDHVDFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGQAWLF 335 I + + RF LA+D+ F + GE+ +G NG GKST MK+L+G+ G L Sbjct: 23 IALRNVCKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILLD 82 Query: 336 GREV---DPRDMATRARVGYMSQAFSLYGELSVRQNLVLHARLYRVPAEQIA--ARTDEM 390 G+ V +PR A +G + Q +L LS QN+ + R P + + DE+ Sbjct: 83 GKPVEITEPR-QAQALGIGIIHQELNLMNHLSAAQNIFIG----REPRKAMGLFIDEDEL 137 Query: 391 ARRFGL------LDVMDSLP-ESLPLGIRQRLSLAVAMVHKPELLILDEPTSGVDPIARD 443 R+ LD+ S P L + +Q + +A A+ +LI+DEPT+ ++ Sbjct: 138 NRQAAAIFARMRLDMDPSTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIA 197 Query: 444 LFWQLMIGLARQDQVTIFISTHFMNEALR--CDRISLMHAGRVLVSATPQALMQQRGAQT 501 ++++ L Q ++IS H M+E LR DR+S+M G+ ++ P MQ+ T Sbjct: 198 ELFRIIRDLQAQGVGIVYIS-HKMDE-LRQIADRVSVMRDGK-YIATVP---MQETSMDT 251 Query: 502 LEQAFIG 508 + +G Sbjct: 252 IISMMVG 258 >gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 120 bits (300), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 136/492 (27%), Positives = 220/492 (44%), Gaps = 48/492 (9%) Query: 20 YGKTVALDAVSLDIPAGCMVGLIGPDGVGKSSLLSLVAGA--RALQQGELAVLGGDMRQQ 77 +G AL+ + + I G VGL G +G GKS+L+ +++G +GE+ G ++ Sbjct: 15 FGGVRALNGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWEGEILWDGKPLQAH 74 Query: 78 RHRQQACPRIAYMPQGLGKNLYPTLSVEENLQFFGRLFGQDAGERR-----RRIDELTTS 132 R I + Q L L P LSV EN+ F G G RR +EL Sbjct: 75 SVRDTEAAGIVIIHQEL--MLVPELSVAENI-FMGHEITLPGGRMNYPAMYRRAEELMRE 131 Query: 133 TGL-DKFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQFWDLIAHI 191 + D +A P + GG +Q + + +L D LLILDEP++ L+ ++ L+ I Sbjct: 132 LNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSS---LTASEIGVLLKII 188 Query: 192 RQQRA-GMSVIVATAYMEE-ADRFDWLVAMDEGRVLATGTPVQLHQ--RTGTASLEEAFI 247 + +A G++ + + ++E A+ D + + +G+ +AT TP+Q + T + Sbjct: 189 KDLKARGVACVYISHKLDEVAEVCDTISVIRDGKHIAT-TPMQEMDVDKIITQMVGREIT 247 Query: 248 ALLPEEKRRGHQTVQVTPLDDTIDSGVAIEAKGLTMRFGDF---LAVDHVDFRIRRGEIF 304 A+ PE R H +V +EA+ +T D VD V F +RRGEI Sbjct: 248 AMYPE---RNHAIGEVV-----------LEARNITCYDIDNPRRKRVDDVSFSVRRGEIL 293 Query: 305 GFLGSNGCGKSTTMKMLTGLLPAS-EGQAWLFGREVDPRDMATRARVGYM-----SQAFS 358 G G G G++ + + G EGQ L G+ D R G + Sbjct: 294 GIAGLVGAGRTELVSAIFGAYRGRYEGQVLLEGKPADTSSPLKSIRRGLCMVPEDRKHHG 353 Query: 359 LYGELSVRQNLVLHA--RLYRVPAEQIAARTDEMARRFGLLDVMDSLP----ESLPLGIR 412 + +L V QN+ L R R +A + G + V + P SL G + Sbjct: 354 IVPDLDVGQNITLTVLNRFSRGSRIDGSAELKTIQDEIGRMRVKTATPFLPITSLSGGNQ 413 Query: 413 QRLSLAVAMVHKPELLILDEPTSGVDPIARDLFWQLMIGLARQDQVTIFISTHFMNEALR 472 Q+ LA ++ +P++LILDEPT GVD A+ ++L+ LA+ I +S+ Sbjct: 414 QKAVLAKMLLAQPKVLILDEPTRGVDVGAKAEIYRLISELAKAGLAIIMVSSELAEVLGV 473 Query: 473 CDRISLMHAGRV 484 DR+ ++ GR+ Sbjct: 474 SDRVLVIGEGRL 485 Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 10/228 (4%) Query: 276 IEAKGLTMRFGDFLAVDHVDFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPAS--EGQAW 333 +E KG+ FG A++ +D +IR GE G G NG GKST MK+L+G+ P EG+ Sbjct: 6 LEMKGIVKSFGGVRALNGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWEGEIL 65 Query: 334 LFGREVDPRDMATRARVG--YMSQAFSLYGELSVRQNLVLHARLY----RVPAEQIAART 387 G+ + + G + Q L ELSV +N+ + + R+ + R Sbjct: 66 WDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGGRMNYPAMYRRA 125 Query: 388 DEMARRFGLLDVMDSLPESLPLGIRQRL-SLAVAMVHKPELLILDEPTSGVDPIARDLFW 446 +E+ R + D+ +LP S G Q+L +A A+ LLILDEP+S + + Sbjct: 126 EELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASEIGVLL 185 Query: 447 QLMIGLARQDQVTIFISTHFMNEALRCDRISLMHAGRVLVSATPQALM 494 +++ L + ++IS A CD IS++ G+ ++ TP M Sbjct: 186 KIIKDLKARGVACVYISHKLDEVAEVCDTISVIRDGK-HIATTPMQEM 232 Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 109/226 (48%), Gaps = 21/226 (9%) Query: 26 LDAVSLDIPAGCMVGLIGPDGVGKSSLLSLVAGA-RALQQGELAVLGGDMRQQRHRQQAC 84 +D VS + G ++G+ G G G++ L+S + GA R +G++ + G + Sbjct: 280 VDDVSFSVRRGEILGIAGLVGAGRTELVSAIFGAYRGRYEGQVLLEGKPADTSSPLKSIR 339 Query: 85 PRIAYMPQGLGKN-LYPTLSVEEN-----LQFFGRLFGQDAGERRRRI-DEL-----TTS 132 + +P+ + + P L V +N L F R D + I DE+ T+ Sbjct: 340 RGLCMVPEDRKHHGIVPDLDVGQNITLTVLNRFSRGSRIDGSAELKTIQDEIGRMRVKTA 399 Query: 133 TGLDKFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQFWDLIAHIR 192 T FL P LSGG +QK L L+ P +LILDEPT GVD ++A+ + LI+ + Sbjct: 400 T---PFL--PITSLSGGNQQKAVLAKMLLAQPKVLILDEPTRGVDVGAKAEIYRLISEL- 453 Query: 193 QQRAGMSVIVATAYMEEA-DRFDWLVAMDEGRVLATGTPVQLHQRT 237 +AG+++I+ ++ + E D ++ + EGR+ L Q T Sbjct: 454 -AKAGLAIIMVSSELAEVLGVSDRVLVIGEGRLRGDFVNDNLSQET 498 >gi|300310367|ref|YP_003774459.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 516 Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 135/496 (27%), Positives = 230/496 (46%), Gaps = 67/496 (13%) Query: 25 ALDAVSLDIPAGCMVGLIGPDGVGKSSLLSLVAGARALQQGELAVLGGDMRQQRHRQQAC 84 AL V L + G + L+G +G GKS+L+ ++ G G++ + G + + Sbjct: 27 ALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDGGKIELDGRAIAPASTLEAQA 86 Query: 85 PRIAYMPQGLGKNLYPTLSVEENLQFFGRL---FGQDAGERRRRIDELTTST-------- 133 I+ + Q + NL P LSV EN+ F GR FG RID + T Sbjct: 87 LGISTVYQEV--NLCPNLSVAENI-FVGRYPTRFG--------RIDWKSVHTQSRQLLQQ 135 Query: 134 -GLDKFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQFWDLIAHIR 192 +D +A P ++Q + + +L +LILDEPT+ +D Q + ++ +R Sbjct: 136 LQIDIDVAAPLSSYPLAIQQMVAISRALSVSAKVLILDEPTSSLDEAEVQQLFKVLRRLR 195 Query: 193 QQRAGMSVIVATAYMEE----ADRFDWL-VAMDEGRVLATGTPVQLHQRTGTASLEEAFI 247 +Q GM+++ T ++++ +DR L + EG L + L + Sbjct: 196 EQ--GMAILFVTHFLDQTYEISDRITVLRNGVREGEYLVS--------ELSRLDLVNKMV 245 Query: 248 ALLPEEKRRGHQTVQVTPLDDTIDSGVA----IEAKGLTMRFGDFLAVDHVDFRIRRGEI 303 + + R+ + + + D+ A ++A+G FG + D ++RRGE+ Sbjct: 246 GVTAVDHRKVEAGAEALASELSTDAAAAGAVFLQAEG----FGRRGVLAPQDLQLRRGEV 301 Query: 304 FGFLGSNGCGKSTTMKMLTGLLPASEGQAWLFGREVD---PRDMATRARVGYMSQAFSLY 360 FG G G G++ ++L G A GQ + G+EV PRD A A +G+ S+ Sbjct: 302 FGLCGLLGSGRTEMARLLFGADRADCGQLRIEGKEVRLNVPRD-AIAAGIGFCSEDRKKE 360 Query: 361 G---ELSVRQNLVL--HAR--LYRVPAEQIAARTDEMARRFGLLDVMDSLPESLPLGI-- 411 G ELSVR+N++L AR L+RV + R +++A + + + P+G+ Sbjct: 361 GAILELSVRENIILALQARQGLFRVLPRK---RQNQIAADYVKWLGIKTADLETPIGLLS 417 Query: 412 ---RQRLSLAVAMVHKPELLILDEPTSGVDPIARDLFWQLMIGLARQDQVTIFISTHFMN 468 +Q+ LA + P +LILDEPT G+D A+ +I + R+ +FIS+ + Sbjct: 418 GGNQQKALLARWLATDPGMLILDEPTRGIDVRAKQEIMDFVIAMCRKGMSILFISSE-IP 476 Query: 469 EALRC-DRISLMHAGR 483 E LRC DR+ ++ R Sbjct: 477 EVLRCSDRMLVLRDRR 492 Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 107/214 (50%), Gaps = 9/214 (4%) Query: 276 IEAKGLTMRFGDFLAVDHVDFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGQAWLF 335 +E G+ F A+ V R+ GE+ +G NG GKST +K+LTG+ G+ L Sbjct: 13 LELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDGGKIELD 72 Query: 336 GREVDPRDMATRARVGYMS--QAFSLYGELSVRQNLVLH---ARLYRVPAEQIAARTDEM 390 GR + P +G + Q +L LSV +N+ + R R+ + + ++ Sbjct: 73 GRAIAPASTLEAQALGISTVYQEVNLCPNLSVAENIFVGRYPTRFGRIDWKSVHTQS-RQ 131 Query: 391 ARRFGLLDVMDSLP-ESLPLGIRQRLSLAVAMVHKPELLILDEPTSGVDPIARDLFWQLM 449 + +D+ + P S PL I+Q ++++ A+ ++LILDEPTS +D ++++ Sbjct: 132 LLQQLQIDIDVAAPLSSYPLAIQQMVAISRALSVSAKVLILDEPTSSLDEAEVQQLFKVL 191 Query: 450 IGLARQDQVTIFISTHFMNEALR-CDRISLMHAG 482 L Q +F+ THF+++ DRI+++ G Sbjct: 192 RRLREQGMAILFV-THFLDQTYEISDRITVLRNG 224 Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 92/200 (46%), Gaps = 9/200 (4%) Query: 20 YGKTVALDAVSLDIPAGCMVGLIGPDGVGKSSLLSLVAGARALQQGELAVLGGDMRQQRH 79 +G+ L L + G + GL G G G++ + L+ GA G+L + G ++R Sbjct: 283 FGRRGVLAPQDLQLRRGEVFGLCGLLGSGRTEMARLLFGADRADCGQLRIEGKEVRLNVP 342 Query: 80 RQQACPRIAYMPQGLGKN-LYPTLSVEEN----LQFFGRLFGQDAGERRRRID-ELTTST 133 R I + + K LSV EN LQ LF +R+ +I + Sbjct: 343 RDAIAAGIGFCSEDRKKEGAILELSVRENIILALQARQGLFRVLPRKRQNQIAADYVKWL 402 Query: 134 GLDKF-LARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQFWDLIAHIR 192 G+ L P G LSGG +QK L L DP +LILDEPT G+D ++ + D + I Sbjct: 403 GIKTADLETPIGLLSGGNQQKALLARWLATDPGMLILDEPTRGIDVRAKQEIMDFV--IA 460 Query: 193 QQRAGMSVIVATAYMEEADR 212 R GMS++ ++ + E R Sbjct: 461 MCRKGMSILFISSEIPEVLR 480 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.138 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,732,004 Number of extensions: 117521 Number of successful extensions: 1105 Number of sequences better than 1.0e-08: 134 Number of HSP's gapped: 742 Number of HSP's successfully gapped: 256 Length of query: 923 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 829 Effective length of database: 1,174,780 Effective search space: 973892620 Effective search space used: 973892620 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 135 (56.6 bits)