BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0016.p
         (190 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311153|ref|YP_003775245.1| hypothetical protein Hsero_1827...   356   e-100

>gi|300311153|ref|YP_003775245.1| hypothetical protein Hsero_1827
           [Herbaspirillum seropedicae SmR1]
          Length = 2903

 Score =  356 bits (914), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/173 (98%), Positives = 172/173 (99%)

Query: 1   LLHQGGHFESRSTGNTILVKRADGEVFVDIYGVGSNYYAVDAGTGNHTIRVASPGTNKVF 60
           LLHQGGHFESRSTGNTILVKRADG VFVDIYGVGSNYYAVDAGTGNHTIRVASPGTNKVF
Sbjct: 168 LLHQGGHFESRSTGNTILVKRADGAVFVDIYGVGSNYYAVDAGTGNHTIRVASPGTNKVF 227

Query: 61  TADGEDDVTVVMGGRFSAVGTGNGQDKVKFVNGWDAVVNKERGSLQYSQMCDLAGKLEVN 120
           TADG+DDVTVVMGGRFSAVGTGNGQDKVKFVNGWDAVVNKERGSLQYSQMCDLAGKLEVN
Sbjct: 228 TADGDDDVTVVMGGRFSAVGTGNGQDKVKFVNGWDAVVNKERGSLQYSQMCDLAGKLEVN 287

Query: 121 SHTAKVYGDSTSYGFSLSIDNQDDSEPWKAGRWKAYAVGYADLTVNSRASTWY 173
           SHTAKVYGDSTSYGFSLSIDNQDDSEPWKAGRWKAYAVGYADLTVNSRASTWY
Sbjct: 288 SHTAKVYGDSTSYGFSLSIDNQDDSEPWKAGRWKAYAVGYADLTVNSRASTWY 340



 Score = 53.9 bits (128), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 2/94 (2%)

Query: 28  VDIYGVGSNYYAVDAGTGNHTIRVASPGTNKVFTADGEDDVTVVMGGRFSAVGTGNGQDK 87
           +D+YG+   +  +    GN  I  ASPGT  + TA+G+D + + MGGR + +  G+G+D 
Sbjct: 75  IDVYGLA--WVDLTVTGGNQHIDAASPGTVTIRTAEGDDTIGIHMGGRHTDLKVGDGRDV 132

Query: 88  VKFVNGWDAVVNKERGSLQYSQMCDLAGKLEVNS 121
           V   +GWD  + K  G L      + AG   VN+
Sbjct: 133 VHLSSGWDTDLTKGDGYLWLDGSHERAGWTAVNA 166


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 673,223
Number of extensions: 29803
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,241,070
Effective search space: 136517700
Effective search space used: 136517700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 128 (53.9 bits)