BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0013.p (256 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311145|ref|YP_003775237.1| transcription regulator protein... 462 e-131 gi|300312835|ref|YP_003776927.1| LysR family transcription regul... 104 8e-24 gi|300309859|ref|YP_003773951.1| LysR family transcription regul... 96 3e-21 gi|300312614|ref|YP_003776706.1| LysR family transcription regul... 72 5e-14 gi|300311724|ref|YP_003775816.1| LysR family transcription regul... 71 1e-13 >gi|300311145|ref|YP_003775237.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 281 Score = 462 bits (1188), Expect = e-131, Method: Compositional matrix adjust. Identities = 235/236 (99%), Positives = 236/236 (100%) Query: 1 MEKPLDLDAVQAFVLAADLHSFTRAAEALESTQSAISLKLKKLEQRLGRRLLERTPRQVR 60 MEKPLDLDAVQAFVLAADLHSFTRAAEALESTQSA+SLKLKKLEQRLGRRLLERTPRQVR Sbjct: 1 MEKPLDLDAVQAFVLAADLHSFTRAAEALESTQSAVSLKLKKLEQRLGRRLLERTPRQVR 60 Query: 61 LSAEGQQFLPAARELLAAHERALEQLDQGPVRFSVGISDHVAGASLPRALAQVHALDPGV 120 LSAEGQQFLPAARELLAAHERALEQLDQGPVRFSVGISDHVAGASLPRALAQVHALDPGV Sbjct: 61 LSAEGQQFLPAARELLAAHERALEQLDQGPVRFSVGISDHVAGASLPRALAQVHALDPGV 120 Query: 121 VVEVRVASSHDLMPLYERGELDAVIVRREPQDRGGKLVMEERIGWFAHPDAQCWAGGALR 180 VVEVRVASSHDLMPLYERGELDAVIVRREPQDRGGKLVMEERIGWFAHPDAQCWAGGALR Sbjct: 121 VVEVRVASSHDLMPLYERGELDAVIVRREPQDRGGKLVMEERIGWFAHPDAQCWAGGALR 180 Query: 181 VATFSQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSALLYRSAP 236 VATFSQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSALLYRSAP Sbjct: 181 VATFSQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSALLYRSAP 236 >gi|300312835|ref|YP_003776927.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 283 Score = 104 bits (259), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 122/254 (48%), Gaps = 4/254 (1%) Query: 3 KPLDLDAVQAFVLAADLHSFTRAAEALESTQSAISLKLKKLEQRLGRRLLERTPRQVRLS 62 K LDLD + V AD +F+RAAE + TQSA+S+++K LE LG+ L R PR V + Sbjct: 2 KTLDLDVLAMIVAVADTGNFSRAAELVHRTQSAVSMQIKTLELALGKPLFLRKPRSVVPT 61 Query: 63 AEGQQFLPAARELLAAHERALEQLDQGPV--RFSVGISDHVAGASLPRALAQVHALDPGV 120 +G+ L AR +L + A + + V R +G+ D A + LP L + A P V Sbjct: 62 QDGEVLLTYARRMLTLRDEAWAAVVRPDVTGRVVIGVPDDYASSLLPSILKKFSATYPKV 121 Query: 121 VVEVRVASSHDLMPLYERGELDAVIVRREPQDRGGKLVMEERIGWFAHPDAQ-CWAGGAL 179 ++V S L P+ + G +D V R + G+ + E + W P A W L Sbjct: 122 EIQVVGLPSSALAPMVKDGTVDLVCATRV-KGISGEFIRFEPMVWATVPSASDLWRERPL 180 Query: 180 RVATFSQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSALLYRSAPGXK 239 +A F RE ++R L+ A I + + ++ + + V AGLA++ L + P Sbjct: 181 PIAVFLPGSVARENAIRSLEKARIGYRTSYESPSLMGLLSMVEAGLAIAPLARCAVPPHF 240 Query: 240 NLLKTQKRIPRSVP 253 LL +P P Sbjct: 241 TLLDHAHGLPDIAP 254 >gi|300309859|ref|YP_003773951.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 297 Score = 95.9 bits (237), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 106/225 (47%), Gaps = 6/225 (2%) Query: 10 VQAFVLAADLHSFTRAAEALESTQSAISLKLKKLEQRLGRRLLERTPRQVRLSAEGQQFL 69 +Q F AA SFT A L TQS +S +++LE+ LGRRL R + L+A+G+ L Sbjct: 22 LQTFSTAASSASFTEAGRQLGLTQSTVSDHIRRLEESLGRRLFVRDTHSLALTADGESLL 81 Query: 70 PAARELLAAHERALEQLD----QGPVRFSVGISDHVAGASLPRALAQVHALDPGVVVEVR 125 AR +L AH RA Q +G VRF G SD +A LP LA + P V +E+ Sbjct: 82 VHARLILQAHARAEAQFSAPRLRGRVRF--GTSDDLAMGPLPDMLAAFRSQHPEVELEIT 139 Query: 126 VASSHDLMPLYERGELDAVIVRREPQDRGGKLVMEERIGWFAHPDAQCWAGGALRVATFS 185 + + DL ++G+LD ++ +R + G + + W PD L + Sbjct: 140 IGLTSDLYASLDQGKLDLLVGKRRSGESRGHSMFSTPMQWLTRPDTLVDLAEPLPLILLP 199 Query: 186 QACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSAL 230 + R +L+ L +G W V G AA GL ++AL Sbjct: 200 EPSITRAATLQALGKSGHHWRIVCTSGSHAGCMAAARGGLGLAAL 244 >gi|300312614|ref|YP_003776706.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 72.0 bits (175), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 3/145 (2%) Query: 5 LDLDAVQAFVLAADLHSFTRAAEALESTQSAISLKLKKLEQRLGRRLLERTPRQVRLSAE 64 ++L V+AF AA L S TRAAE L TQS +S ++ LE+ LG LL+R +Q RL+ Sbjct: 1 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA 60 Query: 65 GQQFLPAARELLAAHERALEQL---DQGPVRFSVGISDHVAGASLPRALAQVHALDPGVV 121 GQ+F A +LL + ++L GP+ +G + V + LP L ++ P Sbjct: 61 GQRFQRLAVKLLDMQRQIRQELGGHSAGPLALRIGSIESVVHSWLPAWLQEIRCRYPDFA 120 Query: 122 VEVRVASSHDLMPLYERGELDAVIV 146 +E+ V +S L RG D V Sbjct: 121 LELTVETSPVLTEQIRRGAQDLVFT 145 >gi|300311724|ref|YP_003775816.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 297 Score = 70.9 bits (172), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 66/118 (55%), Gaps = 4/118 (3%) Query: 5 LDLDAVQAFVLAADLHSFTRAAEALESTQSAISLKLKKLEQRLGRRLLERTPRQVRLSAE 64 +D+ VQAFV AD SF AA AL TQ+A++L+L+KLE LG L+ERT R + L+ Sbjct: 3 IDILGVQAFVAIADHGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLIERTTRSIALTEI 62 Query: 65 GQQFLPAARELLAAHERALEQL-DQGPVR---FSVGISDHVAGASLPRALAQVHALDP 118 G+ FLP AR LLA AL ++ + G R S+ V LPR L A P Sbjct: 63 GRDFLPQARRLLAELAGALVEIRETGIARRGDVSIACVPTVGVQYLPRILQAYSARYP 120 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 613,346 Number of extensions: 19905 Number of successful extensions: 137 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 139 Number of HSP's successfully gapped: 29 Length of query: 256 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 173 Effective length of database: 1,226,865 Effective search space: 212247645 Effective search space used: 212247645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)