BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0002.p (469 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311134|ref|YP_003775226.1| transcription regulator protein... 947 0.0 gi|300312133|ref|YP_003776225.1| transcription regulator protein... 335 4e-93 gi|300312337|ref|YP_003776429.1| transcription regulator protein... 318 7e-88 gi|300313928|ref|YP_003778020.1| GntR family transcription regul... 318 8e-88 gi|300311016|ref|YP_003775108.1| MocR family transcription regul... 146 3e-36 >gi|300311134|ref|YP_003775226.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 500 Score = 947 bits (2448), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/469 (99%), Positives = 468/469 (99%) Query: 1 LLRESGDSLVEQIVRGIRARIDDKLLRSGMRMPSIRQFADANQISRFTVVEAYDRLVAQG 60 LLRESGDSLVEQIVRGIRARIDDKLLRSGMRMPSIRQFAD NQISRFTVVEAYDRLVAQG Sbjct: 32 LLRESGDSLVEQIVRGIRARIDDKLLRSGMRMPSIRQFADTNQISRFTVVEAYDRLVAQG 91 Query: 61 YLESRRGSGFYVKERAPLGGSYGAAQAELDTEPGRGLDVVWLVRNMFRQMPPAKMPGGGL 120 YLESRRGSGFYVKERAPLGGSYGAAQAELDTEPGRGLDVVWLVRNMFRQMPPAKMPGGGL Sbjct: 92 YLESRRGSGFYVKERAPLGGSYGAAQAELDTEPGRGLDVVWLVRNMFRQMPPAKMPGGGL 151 Query: 121 LPPDWLDGELIANALRAVSRDNPQLLLGYGTPQGFLPLRQQLQLKLAELEIAAAPEQIVL 180 LPPDWLDGELIANALRAVSRDNPQLLLGYGTPQGFLPLRQQLQLKLAELEIAAAPEQIVL Sbjct: 152 LPPDWLDGELIANALRAVSRDNPQLLLGYGTPQGFLPLRQQLQLKLAELEIAAAPEQIVL 211 Query: 181 TTGVTQGLDTVARHFLRPGDVIFVDDPAWFLMFGSFAALGAKVVGIPRLGDGPDIARLRE 240 TTGVTQGLDTVARHFLRPGDVIFVDDPAWFLMFGSFAALGAKVVGIPRLGDGPDIARLRE Sbjct: 212 TTGVTQGLDTVARHFLRPGDVIFVDDPAWFLMFGSFAALGAKVVGIPRLGDGPDIARLRE 271 Query: 241 LAAVHKPKLYVINSVLHNPTSTSLSAAKAFQVLRIAEEHDFVIVEDDIYCDMHPGSAVQP 300 LAAVHKPKLYVINSVLHNPTSTSLSAAKAFQVLRIAEEHDFVIVEDDIYCDMHPGSAVQP Sbjct: 272 LAAVHKPKLYVINSVLHNPTSTSLSAAKAFQVLRIAEEHDFVIVEDDIYCDMHPGSAVQP 331 Query: 301 ATRIAALDQLQRVIYLGGFSKTLSANLRVGYIATSAELARSLADRKLLSTLTTGEIGERV 360 ATRIAALDQLQRVIYLGGFSKTLSANLRVGYIATSAELARSLADRKLLSTLTTGEIGERV Sbjct: 332 ATRIAALDQLQRVIYLGGFSKTLSANLRVGYIATSAELARSLADRKLLSTLTTGEIGERV 391 Query: 361 AYKVLSEGHYRKHAERVRARLNGARDKVMRQLERLGMDVVEAPPCGMFLWVDTGRDTNVM 420 AYKVLSEGHYRKHAERVRARLNGARDKVMRQLERLGMDVVEAPPCGMFLWVDTGRDTNVM Sbjct: 392 AYKVLSEGHYRKHAERVRARLNGARDKVMRQLERLGMDVVEAPPCGMFLWVDTGRDTNVM 451 Query: 421 TEAAMQEGFLLAPGSLFSPAQLPSTYMRINVASMADPGIWRFLAQAMER 469 TEAAMQEGFLLAPGSLFSPAQLPSTYMRINVASMADPGIWRFLAQAMER Sbjct: 452 TEAAMQEGFLLAPGSLFSPAQLPSTYMRINVASMADPGIWRFLAQAMER 500 >gi|300312133|ref|YP_003776225.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 491 Score = 335 bits (859), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 191/470 (40%), Positives = 272/470 (57%), Gaps = 11/470 (2%) Query: 3 RESGDSLVEQIVRGIRARIDDKLLRSGMRMPSIRQFADANQISRFTVVEAYDRLVAQGYL 62 + S LV++I + + + L G ++PS+R A++ Q+SR TV AY++LVA G++ Sbjct: 26 KHSARLLVDRIFTAVLEGVRTRRLAHGDKLPSLRVVAESAQVSRDTVARAYEKLVAHGHV 85 Query: 63 ESRRGSGFYVKERAPLGGSYGAAQAELDTEPGRGLDVVWLVRNMFRQMPPAKMPGGGLLP 122 +R G+GF+V+ + A A+ T P L W R + + + G G LP Sbjct: 86 YTRPGAGFFVRVDNQV------ANAQTQTAPA-PLLTNWRQRLLDPRTLLHRGLGSGDLP 138 Query: 123 PDWLDGELIANALRAVSRDNPQLLLGYGTPQGFLPLRQQLQLKLAELEIAAAPEQIVLTT 182 +W++ +A ALRAVSR N GYG QG+LPLRQQLQ KLA++ + P Q++ T Sbjct: 139 AEWINVPQLAAALRAVSRSNINWAAGYGDAQGYLPLRQQLQRKLADIGVDVTPPQVLTTL 198 Query: 183 GVTQGLDTVARHFLR-PGDVIFVDDPAWFLMFGSFAALGAKVVGIPRLGDGPDIARLREL 241 G T ++ + +LR PG + VDDP FL+ A G +VG+ R DGPDI L+ Sbjct: 199 GATDAINLIVMSYLRQPGMTVLVDDPGSFLLMERLLASGMHIVGVARDADGPDITALQNA 258 Query: 242 AAVHKPKLYVINSVLHNPTSTSLSAAKAFQVLRIAEEHDFVIVEDDIYCDMHPGSAVQPA 301 H P Y S+LH+P T LS +AFQ+LR+AE +F IVEDD Y D+ P A Sbjct: 259 CEQHGPTFYFCQSLLHSPGYTGLSPQRAFQILRLAERFNFTIVEDDTYGDLAPAHRSPHA 318 Query: 302 TRIAALDQLQRVIYLGGFSKTLSANLRVGYIATSAELARSLADRKLLSTLTTGEIGERVA 361 TR+A+LDQLQ V+Y+G FSKTL A +R G+IA + + L KL+S + G + ER Sbjct: 319 TRLASLDQLQHVLYVGSFSKTLGAGMRAGFIAGNPQQIEWLLLYKLVSRASNGSLAERAI 378 Query: 362 YKVLSEGHYRKHAERVRARLNGARDKVMRQLERLGMDVVEAPPCGMFLWVDTGRDTNVM- 420 Y++LSEG YR+H E++R RL+ AR ++M LE LG+ + P G++LW D N M Sbjct: 379 YRLLSEGGYRRHCEQLRTRLDQARPRLMAALEALGIVLPHRPDAGLYLWGKLPGDLNAME 438 Query: 421 -TEAAMQEGFLLAPGSLFSPAQLPSTYMRINVASMADPGIWRFLAQAMER 469 E + G+L APG +FS Q +YMR NVAS D + R L+ +ER Sbjct: 439 VAERMLANGYLTAPGPVFSSGQAARSYMRFNVASSDDEAL-RALSNVLER 487 >gi|300312337|ref|YP_003776429.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 469 Score = 318 bits (815), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 180/457 (39%), Positives = 262/457 (57%), Gaps = 14/457 (3%) Query: 4 ESGDSLVEQIVRGIRARIDDKLLRSGMRMPSIRQFADANQISRFTVVEAYDRLVAQGYLE 63 E+ +L +V+ IR +I + + G R+PSIR+ A + ++ T+V +D L A G E Sbjct: 3 EASTTLTSTLVQLIRRQIAEGVYAPGSRLPSIREMAARHGCAKNTIVNVFDELTALGLAE 62 Query: 64 SRRGSGFYVKERAPLGGSYGAAQAELDTEPGRGLDVVWLVRNMFRQMPPAKMPGGGLLPP 123 RRG+GF+V P + + + R +DVVWL+R + P G G P Sbjct: 63 PRRGAGFFVCVAPP------RPKEDEEGNLSRAMDVVWLMREQLKHDPGQLRLGDGFPPV 116 Query: 124 DWLDGELIANALRAVSRDNPQLLLGYGTPQGFLPLRQQLQLKLAELEIAAAPEQIVLTTG 183 +WL + + V R L GYG+ G+LPLRQ L KLA+ I A QIVLT G Sbjct: 117 EWLHDVRLDKFHQKVVRTGIGALFGYGSRFGYLPLRQHLVHKLAQHGIEAGTGQIVLTHG 176 Query: 184 VTQGLDTVARHFLRPGDVIFVDDPAWFLMFGSFAALGAKVVGIPRLGDGPDIARL-RELA 242 Q LD V RHF+RPGD + VD+P +++++G GA+++GIPRL DGPD+A L REL Sbjct: 177 ANQALDIVIRHFIRPGDRVLVDEPGYYMLYGKLKLSGARIIGIPRLPDGPDVAVLERELH 236 Query: 243 AVHKPKLYVINSVLHNPTSTSLSAAKAFQVLRIAEEHDFVIVEDDIYCDMHPGSAVQPAT 302 KP L+ S+ HNPT++ S KA ++L++A+ + +IVE+D + D P + A Sbjct: 237 RPGKPPLFFTQSLAHNPTASDTSPHKAHRILQLADRYQAIIVENDAFADFKPAT----AP 292 Query: 303 RIAALDQLQRVIYLGGFSKTLSANLRVGYIATSAELARSLADRKLLSTLTTGEIGERVAY 362 RIA LDQL+R +Y+G FSK++SA LRVG+IA +LA LAD K+L +++ E ER Sbjct: 293 RIATLDQLRRTVYVGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHMSSSEYCERTLD 352 Query: 363 KVLSEGHYRKHAERVRARLNGARDKVMRQLERLGMDVVEAPPCGMFLWVDTG--RDTNVM 420 +LS+GH+ +H R+R RL A ++ QLE LG ++ AP M+LW D + Sbjct: 353 VILSDGHFSRHTARLRERLAQATEQARAQLEGLGAELFCAPQQAMYLWARFPWFEDAKRL 412 Query: 421 TEAAMQEGFLLAPGSLFS-PAQLPSTYMRINVASMAD 456 + MQ +LAPGS+F + + R NV +AD Sbjct: 413 AQRLMQRQIVLAPGSIFHVDTEQTQPWSRFNVGLLAD 449 >gi|300313928|ref|YP_003778020.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 472 Score = 318 bits (814), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 186/466 (39%), Positives = 258/466 (55%), Gaps = 12/466 (2%) Query: 1 LLRESGDSLVEQIVRGIRARIDDKLLRSGMRMPSIRQFADANQISRFTVVEAYDRLVAQG 60 L R++ LVEQ+ G+ I+ LRSG R+PS+RQFA + I TVVEAY++LVA+G Sbjct: 13 LKRKTSARLVEQVANGLAGLIETGELRSGERLPSVRQFAQHHDIGSSTVVEAYEQLVARG 72 Query: 61 YLESRRGSGFYVKERAPLGGSYGAAQAELDTEPGRGLDVVWLVRNMFRQMPPAKMPGGGL 120 L++RRG+GF+V RA G Q + P +D WL+ MF G G Sbjct: 73 MLQARRGAGFFVAARAGQSG-----QHAVFVPPEPVIDSAWLLSEMFADERVPIKAGCGW 127 Query: 121 LPPDWLDGELIANALRAVSRDNPQLLLGYGTPQGFLPLRQQLQLKLAELEIAAAPEQIVL 180 LP WL+ E + A R + R +GYG P G+ PLRQ + L + EQ++ Sbjct: 128 LPGKWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWSLELGIEQVLT 187 Query: 181 TTGVTQGLDTVARHFLRPGDVIFVDDPAWFLMFGSFAALGAKVVGIPRLGDGPDIARLRE 240 T G TQ LD V R +PGD + +DDP + + G V+G+PR G D L Sbjct: 188 THGATQALDLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAGLNVIGVPRTPGGVDTDVLET 247 Query: 241 LAAVHKPKLYVINSVLHNPTSTSLSAAKAFQVLRIAEEHDFVIVEDDIYCDMHPGSAVQP 300 LA H PK++ SVL NPT TS + A A +VL+ AE H F +VEDDI+ ++ G A P Sbjct: 248 LARTHHPKMFFTTSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFREL--GQATDP 305 Query: 301 ATRIAALDQLQRVIYLGGFSKTLSANLRVGYIATSAELARSLADRKLLSTLTTGEIGERV 360 +AALD LQRVIY+G +SKT++ +LRVGYIA ELAR + K++ TLT EI ER+ Sbjct: 306 M--LAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEINERL 363 Query: 361 AYKVLSEGHYRKHAERVRARLNGARDKVMRQLERLGMDVVEAPPCGMFLWVDT-GRDTNV 419 + VL+EGH+R+H + + A L A+ + +L +G+ A GMF W G + + Sbjct: 364 VHNVLTEGHHRRHVQTLNATLLSAQATLNAKLSEVGLTPFTAARGGMFSWATIEGCELSA 423 Query: 420 --MTEAAMQEGFLLAPGSLFSPAQLPSTYMRINVASMADPGIWRFL 463 + + A Q+G LAPG F + T R NV P ++ FL Sbjct: 424 REIADRARQKGIWLAPGDFFHLSAPHQTSFRFNVGYADVPELFDFL 469 >gi|300311016|ref|YP_003775108.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 480 Score = 146 bits (369), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 119/456 (26%), Positives = 212/456 (46%), Gaps = 16/456 (3%) Query: 9 LVEQIVRGIRARIDDKLLRSGMRMPSIRQFADANQISRFTVVEAYDRLVAQGYLESRRGS 68 L +Q + A I D +LR G R+ S+R + +++S TVV AY+ L ++G +ES+ S Sbjct: 6 LYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIESQPQS 65 Query: 69 GFYVKERAPLGGSYGAAQAELDTEPG----RGLDVVWLVRNMFRQMPP-AKMPGGGLLP- 122 G++V+E+ + P +DV LV + + +P G P Sbjct: 66 GYFVREQPEAPPKPALRTTSREDHPAWQESTEVDVSRLVLATLKTIQQDGTVPLGSPYPN 125 Query: 123 PDWLDGELIANALRAVSRDNPQLLLGYGTPQGFLPLRQQLQLKLAELEIAAAPEQIVLTT 182 P +A ++R Q + P G L +Q+ + E + PE+IV+T Sbjct: 126 PALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPELLRQIARRYLENGLKVDPEEIVITV 185 Query: 183 GVTQGLDTVARHFLRPGDVIFVDDPAWFLMFGSFAALGAKVVGIPRLGD-GPDIARLREL 241 G T+ ++ + RPGD I V+ P ++ M + LG + + IP G D+ L E Sbjct: 186 GATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRGIDVGALEER 245 Query: 242 AAVHKPKLYVINSVLHNPTSTSLSAAKAFQVLRIAEEHDFVIVEDDIYCDMHPGSAVQPA 301 ++ NP + ++ +++R+AE+H ++E+ +Y +++ G+A P+ Sbjct: 246 MKTQAIAACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMPVIENAVYSELYYGNA-HPS 304 Query: 302 TRIAALDQLQRVIYLGGFSKTLSANLRVGYIATSAELARSLADRKLLSTLTTGEIGERVA 361 + + D+ V++ FSK+L++ R+G+ A + K L+TL T +R Sbjct: 305 S-LKNYDRDGLVLHCSSFSKSLTSAYRIGW-AMPGRYRAQVEKLKFLNTLATPTAPQRAI 362 Query: 362 YKVLSEGHYRKHAERVRARLNGARDKVMRQLERL---GMDVVEAPPCGMFLWVD--TGRD 416 + L++G Y +H RVR RD + + R G V E P G LWV+ G D Sbjct: 363 AEYLTQGGYERHLRRVRRAFAQQRDMMRHFVLRFFPAGTQVSE-PQGGYVLWVELPQGVD 421 Query: 417 TNVMTEAAMQEGFLLAPGSLFSPAQLPSTYMRINVA 452 + ++ G +APG +F+ S ++R+N + Sbjct: 422 AMELYRRSLALGITVAPGRIFAATNRYSHFIRLNYS 457 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,442,733 Number of extensions: 59785 Number of successful extensions: 236 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 212 Number of HSP's successfully gapped: 12 Length of query: 469 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 380 Effective length of database: 1,198,455 Effective search space: 455412900 Effective search space used: 455412900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)