BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0129.p
         (416 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309383|ref|YP_003773475.1| permease [Herbaspirillum serope...   176   4e-45
gi|300309898|ref|YP_003773990.1| major facilitator superfamily p...   129   3e-31

>gi|300309383|ref|YP_003773475.1| permease [Herbaspirillum
           seropedicae SmR1]
          Length = 412

 Score =  176 bits (445), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 146/377 (38%), Positives = 209/377 (55%), Gaps = 7/377 (1%)

Query: 9   SQNSVNLEGASTSRIALFASAVGIVVLVLYASQPLVGVIGPELDISNNMSGLATTVTLLG 68
           +Q   +  G S+S I L AS  G+ V  LY SQP++GV+  ++  S    G+    T LG
Sbjct: 14  AQPGASAHGLSSSLILLLASGAGLAVASLYYSQPMLGVLADDIGASERAVGMVPMSTQLG 73

Query: 69  YAAGLFFLVPLSDVVENKRLILTTLGADALALSVLAISPNGLVFLSASFVVGLLTSAIQM 128
           YA G+  L PL D  + +R+IL        AL +   +      L+AS  VGL  +  Q 
Sbjct: 74  YALGILLLAPLGDRYDRRRIILIKAAILTAALLLAGAASGVGALLAASLAVGLTATLAQD 133

Query: 129 LVPVAASLSSEAHRGRTIGNVMSGLMLGILLSRPIASLVTQFFGWRYFYGALGMSVAILT 188
           +VP AASL+ E  RGR +G VM+GL+LGILLSR ++  V + FGWR  + A  +S+A++ 
Sbjct: 134 IVPAAASLAPEQSRGRVVGTVMTGLLLGILLSRVVSGFVAEHFGWRAMFVAAAVSIALIG 193

Query: 189 IILYRRIPSFRPTGRATYGQLVRSLMSLVKEEPVLRYRAASQAMCMGAFGLFWTSVALQL 248
           +  +R +P F PT   +YG L+ SL +L K+   LR  A +Q +    F  FW+++A+ L
Sbjct: 194 LAAWRGLPRFHPTTHLSYGALMASLATLFKKHGALRRAALAQGLLSVGFSAFWSTLAVML 253

Query: 249 GQAPFSLGQQGIALFALAGAAGVVIAPIAGRAGDRGLTGPMTVMAHLAIICAFFLAFAGV 308
             APF LG      F LAGAAG + AP+AGR  D+   GP  ++  L +  A  ++FA +
Sbjct: 254 HGAPFHLGSAAAGAFGLAGAAGALAAPLAGRISDK--KGP-ELVTRLGVGLA-IVSFAAM 309

Query: 309 VLLPD-KRSISLGLVVLAAVVLDLGVIADQTLGRRAINLLRPEARGRMNG-LFTGLFFLG 366
            L P       L L+ +AAV  DLGV A     +  +  + P AR R+N  LF G+ F+G
Sbjct: 310 ALSPWFSTQGQLVLLAVAAVGFDLGVQATLVAHQTIVYSIEPGARSRLNAILFVGM-FIG 368

Query: 367 GAVGSALSGIVWNTWGW 383
            A G+AL  +V   WGW
Sbjct: 369 MAAGAALGSLVLAQWGW 385


>gi|300309898|ref|YP_003773990.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 392

 Score =  129 bits (325), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 115/368 (31%), Positives = 181/368 (49%), Gaps = 10/368 (2%)

Query: 25  LFASAVGIVVLVLYASQPLVGVIGPELDISNNMSGLATTVTLLGYAAGLFFLVPLSDVVE 84
           LFA A G+ V  +Y +QPL+  +  +  IS    G   T T LG A  L  LVPL D V 
Sbjct: 15  LFAIASGLSVANVYYAQPLLDALSDDFKISQAAVGGVVTATQLGCALALLLLVPLGDKVP 74

Query: 85  NKRLILTTLGADALALSVLAISPNGLVFLSASFVVGLLTSAI-QMLVPVAASLSSEAHRG 143
            K L+   L A   AL  + ++ +  V L+    VGLL +A+ Q L+  AAS + E  RG
Sbjct: 75  RKMLMGIQLLALVCALVTVGLARSSYVLLAGMLAVGLLGTAMTQGLIAYAASAAGEDERG 134

Query: 144 RTIGNVMSGLMLGILLSRPIASLVTQFFGWRYFYGALGMSVAILTIILYRRIPSFRPTGR 203
           R +G   SG+ +G+LLSR  +  V+   GWR  Y    + +  L   L++R+P+      
Sbjct: 135 RVVGAAQSGVFIGLLLSRVFSGAVSDVTGWRGVYLCAAIMMLCLAWPLWKRLPAIPVQAD 194

Query: 204 A-TYGQLVRSLMSLVKEEPVLRYRAASQAMCMGAFGLFWTSVALQLGQAPFSLGQQGIAL 262
              Y  L++S+  L++++ VL+ R     +   AF +FW+++ L L  +P+      I  
Sbjct: 195 GLRYLTLIKSMWCLLRDDKVLQVRGVLAMLMFAAFNVFWSALVLPLSASPYHFSHTVIGA 254

Query: 263 FALAGAAGVVIAPIAGRAGDRGLTGPMTVMAHLAIICAFFLAFAGVVLLPDKRSISLGLV 322
           F L G  G + A  AGR  D+G     T    LA++    LA+  + L+      SL  +
Sbjct: 255 FGLVGVIGALAASKAGRWSDQG-HAQRTSAVSLAVL---LLAWWPLSLMES----SLWAL 306

Query: 323 VLAAVVLDLGVIADQTLGRRAINLLRPEARGRMNGLFTGLFFLGGAVGSALSGIVWNTWG 382
           V   ++LDLG  A     +  I    P+A  R+ G++   + +G  +G+  +  ++   G
Sbjct: 307 VAGIILLDLGGQALHVTNQSLIFRSSPQAHSRLVGVYMLFYAVGSGLGAISTTAIYAARG 366

Query: 383 WSGICVAG 390
           W G+C  G
Sbjct: 367 WQGVCFLG 374


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 996,486
Number of extensions: 36618
Number of successful extensions: 259
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 6
Length of query: 416
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 328
Effective length of database: 1,203,190
Effective search space: 394646320
Effective search space used: 394646320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)