BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0128.p
         (188 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312979|ref|YP_003777071.1| UDP-glucose 6-dehydrogenase [He...   348   1e-97
gi|300311320|ref|YP_003775412.1| UDP-glucose 6-dehydrogenase [He...   280   5e-77

>gi|300312979|ref|YP_003777071.1| UDP-glucose 6-dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 459

 Score =  348 bits (894), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 172/176 (97%), Positives = 173/176 (98%)

Query: 1   MKITIIGTGYVGLVTGACLAELGNDVFCLDVDQRKVDILNNGGIPIHEPGLEEVVERNRA 60
           MKITIIGTGYVGLVTGACLAELGNDVFCLDVDQRKVDILNNGGIPIHEPGLEEVVERNRA
Sbjct: 1   MKITIIGTGYVGLVTGACLAELGNDVFCLDVDQRKVDILNNGGIPIHEPGLEEVVERNRA 60

Query: 61  AGRLQFSTDVAASVAHGDIQFIAVGTPPDEDGSADLQYVLAAARNIGRYMEGFKVVVDKS 120
           AGRLQFSTDVAASVAHGDIQFIAVGTPPDEDGSADLQYVLAAARNIGRYMEGFKVVVDKS
Sbjct: 61  AGRLQFSTDVAASVAHGDIQFIAVGTPPDEDGSADLQYVLAAARNIGRYMEGFKVVVDKS 120

Query: 121 TVPVGTADRVKAAIADELAQRGKTELSFSVVSNPEFLKEGAAVEDFMRPDRAINRH 176
           TVPVGTADRVKAAIADELAQRGKTELSFSVVSNPEFLKEGAAVEDFMRPDR +  H
Sbjct: 121 TVPVGTADRVKAAIADELAQRGKTELSFSVVSNPEFLKEGAAVEDFMRPDRIVIGH 176


>gi|300311320|ref|YP_003775412.1| UDP-glucose 6-dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 458

 Score =  280 bits (716), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 134/173 (77%), Positives = 155/173 (89%)

Query: 1   MKITIIGTGYVGLVTGACLAELGNDVFCLDVDQRKVDILNNGGIPIHEPGLEEVVERNRA 60
           M IT+IGTGYVGLVTGACLAELGN VFCLDVD+ K++ILN+GG+PI+EPGL+E++ RNRA
Sbjct: 1   MNITVIGTGYVGLVTGACLAELGNKVFCLDVDRNKIEILNSGGVPIYEPGLKEIIARNRA 60

Query: 61  AGRLQFSTDVAASVAHGDIQFIAVGTPPDEDGSADLQYVLAAARNIGRYMEGFKVVVDKS 120
           +GRL FSTDVAASVAHG++QFIAVGTPPDEDGSADLQYV+AAARNIGR+ME   +VVDKS
Sbjct: 61  SGRLIFSTDVAASVAHGEVQFIAVGTPPDEDGSADLQYVVAAARNIGRHMERNCIVVDKS 120

Query: 121 TVPVGTADRVKAAIADELAQRGKTELSFSVVSNPEFLKEGAAVEDFMRPDRAI 173
           TVPVGT ++VKAAI  EL  RG+ EL   +VSNPEFLKEGAAVEDFMRPDR +
Sbjct: 121 TVPVGTGEKVKAAIRAELEARGRGELDAMIVSNPEFLKEGAAVEDFMRPDRIV 173


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 596,857
Number of extensions: 24053
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 2
Length of query: 188
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,241,070
Effective search space: 134035560
Effective search space used: 134035560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)