BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0126.p
         (223 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311320|ref|YP_003775412.1| UDP-glucose 6-dehydrogenase [He...   413   e-117
gi|300312979|ref|YP_003777071.1| UDP-glucose 6-dehydrogenase [He...   387   e-109
gi|300312048|ref|YP_003776140.1| UDP-N-acetyl-D-mannosaminuronat...    59   3e-10

>gi|300311320|ref|YP_003775412.1| UDP-glucose 6-dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 458

 Score =  413 bits (1062), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/220 (91%), Positives = 210/220 (95%)

Query: 1   MNITVIGTGYVGLVTGACLAELGNKVFCLDVDRNKIEILNSGGVPIYEPGLKEIIARNRA 60
           MNITVIGTGYVGLVTGACLAELGNKVFCLDVDRNKIEILNSGGVPIYEPGLKEIIARNRA
Sbjct: 1   MNITVIGTGYVGLVTGACLAELGNKVFCLDVDRNKIEILNSGGVPIYEPGLKEIIARNRA 60

Query: 61  SGRLIFSTDVAASVAHGEVQFIAVGTPPDEDGSADLQYVVAAARNIGRHMERNCIVVDKS 120
           SGRLIFSTDVAASVAHGEVQFIAVGTPPDEDGSADLQYVVAAARNIGRHMERNCIVVDKS
Sbjct: 61  SGRLIFSTDVAASVAHGEVQFIAVGTPPDEDGSADLQYVVAAARNIGRHMERNCIVVDKS 120

Query: 121 TVPVGTGEKVKAAIRAELEARGRGELDAMIVSNPEFLKEGAAVEDFMRPDRIVIGHDQSP 180
           TVPVGTGEKVKAAIRAELEARGRGELDAMIVSNPEFLKEGAAVEDFMRPDRIVIG ++  
Sbjct: 121 TVPVGTGEKVKAAIRAELEARGRGELDAMIVSNPEFLKEGAAVEDFMRPDRIVIGVEEGA 180

Query: 181 EGLHAQTLMKKLYAPFNRNHERTYWMDVRSAEFTKYAANA 220
            G  A+ +M++LYAP NRNHER  +MDV+SAEFTKYAANA
Sbjct: 181 AGAEAREVMRELYAPLNRNHERILYMDVKSAEFTKYAANA 220


>gi|300312979|ref|YP_003777071.1| UDP-glucose 6-dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 459

 Score =  387 bits (995), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 183/220 (83%), Positives = 203/220 (92%)

Query: 1   MNITVIGTGYVGLVTGACLAELGNKVFCLDVDRNKIEILNSGGVPIYEPGLKEIIARNRA 60
           M IT+IGTGYVGLVTGACLAELGN VFCLDVD+ K++ILN+GG+PI+EPGL+E++ RNRA
Sbjct: 1   MKITIIGTGYVGLVTGACLAELGNDVFCLDVDQRKVDILNNGGIPIHEPGLEEVVERNRA 60

Query: 61  SGRLIFSTDVAASVAHGEVQFIAVGTPPDEDGSADLQYVVAAARNIGRHMERNCIVVDKS 120
           +GRL FSTDVAASVAHG++QFIAVGTPPDEDGSADLQYV+AAARNIGR+ME   +VVDKS
Sbjct: 61  AGRLQFSTDVAASVAHGDIQFIAVGTPPDEDGSADLQYVLAAARNIGRYMEGFKVVVDKS 120

Query: 121 TVPVGTGEKVKAAIRAELEARGRGELDAMIVSNPEFLKEGAAVEDFMRPDRIVIGHDQSP 180
           TVPVGT ++VKAAI  EL  RG+ EL   +VSNPEFLKEGAAVEDFMRPDRIVIGHDQSP
Sbjct: 121 TVPVGTADRVKAAIADELAQRGKTELSFSVVSNPEFLKEGAAVEDFMRPDRIVIGHDQSP 180

Query: 181 EGLHAQTLMKKLYAPFNRNHERTYWMDVRSAEFTKYAANA 220
           EGLHAQTLMKKLYAPFNRNHERTYWMDVRSAEFTKYAANA
Sbjct: 181 EGLHAQTLMKKLYAPFNRNHERTYWMDVRSAEFTKYAANA 220


>gi|300312048|ref|YP_003776140.1| UDP-N-acetyl-D-mannosaminuronate
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 426

 Score = 58.9 bits (141), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 66/130 (50%), Gaps = 10/130 (7%)

Query: 3   ITVIGTGYVGLVTGACLAELGNK--VFCLDVDRNKIEILNSGGVPIYEPGLKEIIARNRA 60
           + V+G GYVGL       E G K      D+ R+KIE       P  E    E+    RA
Sbjct: 4   VAVVGLGYVGL---PLAVEFGKKRATVGFDLSRSKIENYRRFVDPTGEVSSAEL----RA 56

Query: 61  SGRLIFSTDVAASVAHGEVQFIAVGTPPDEDGSADLQYVVAAARNIGRHMERNCIVVDKS 120
           + +L  STD  A +A  +   +AV TP DE  + D   +  A++ +G+HM+R  IVV +S
Sbjct: 57  ASQLTVSTD-PAILADADYIVVAVPTPVDEAHNPDFGPLAGASQTVGKHMKRGAIVVFES 115

Query: 121 TVPVGTGEKV 130
           TV  G  E+V
Sbjct: 116 TVYPGATEEV 125


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 719,597
Number of extensions: 30996
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 3
Length of query: 223
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,231,600
Effective search space: 173655600
Effective search space used: 173655600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)