BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0121.p
         (456 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311315|ref|YP_003775407.1| hypothetical protein Hsero_1998...   922   0.0  

>gi|300311315|ref|YP_003775407.1| hypothetical protein Hsero_1998
           [Herbaspirillum seropedicae SmR1]
          Length = 470

 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/456 (99%), Positives = 455/456 (99%)

Query: 1   MLAMLGALYAAMPAQADDWGTYRKPFAADSLWNSRPVNPSFAPDVIPTSTYFPAINAGAY 60
           MLAMLGALYAAMPAQADDWGTYRKPFAADSLWNSRPVNPSFAPDVIPTSTYFPAINAGAY
Sbjct: 15  MLAMLGALYAAMPAQADDWGTYRKPFAADSLWNSRPVNPSFAPDVIPTSTYFPAINAGAY 74

Query: 61  STGVFLASPQDPPVTVTGAAGSKGLLITDEEGYHDITIPHWPASVKPASGSDGHADIVDP 120
           STGVFLASPQDPPVTVTGAAGSKGLLITDEEGYHDITIPHWPASVKPASGSDGHADIVDP
Sbjct: 75  STGVFLASPQDPPVTVTGAAGSKGLLITDEEGYHDITIPHWPASVKPASGSDGHADIVDP 134

Query: 121 TTNIIHSFWQLKQVGTQWTAAQYSWTKLDGRGWPDPAHYYQGARATGVPASGGLIRTHEV 180
           TTNIIHSFWQLKQVGTQWTAAQYSWTKLDGRGWPDPAHYYQGARATGVPASGGLIRTHEV
Sbjct: 135 TTNIIHSFWQLKQVGTQWTAAQYSWTKLDGRGWPDPAHYYQGARATGVPASGGLIRTHEV 194

Query: 181 EQKPAYYPHALAMSLTFNGLSANPTYVFPATSADTNAAKLNSGAFPEGALVMLPPDFDTS 240
           EQKPAYYPHALAMSLTFNGLSANPTYVFPATSADTNAAKLNSGAFPEGALVMLPPDFDTS
Sbjct: 195 EQKPAYYPHALAMSLTFNGLSANPTYVFPATSADTNAAKLNSGAFPEGALVMLPPDFDTS 254

Query: 241 KLTDPELRRVAETLKRYGAYIVDANTGTPFAIYVEIGASYNLHPNGWNNTAASELQVIRA 300
           KLTDPELRRVAETLKRYGAYIVDANTGTPFAIYVEIGASYNLHPNGWNNTAASELQVIRA
Sbjct: 255 KLTDPELRRVAETLKRYGAYIVDANTGTPFAIYVEIGASYNLHPNGWNNTAASELQVIRA 314

Query: 301 ALRRVTGASGWVDGNGNSFTPNQNLNMLSMRGNWTQQSGSTLGKYSSWDQAVVFPASSSV 360
           ALRRVTGASGWVDGNGNSFTPNQNLNMLSMRGNWTQQSGSTLGKYSSWDQAVVFPASSSV
Sbjct: 315 ALRRVTGASGWVDGNGNSFTPNQNLNMLSMRGNWTQQSGSTLGKYSSWDQAVVFPASSSV 374

Query: 361 SEVVNYANRGIAGISWAKPVTGRNYKLTARTTGGGKLRLLVQDQATGKAAFDSGYLDNGQ 420
           SEVVNYANRGIAGI+WAKPVTGRNYKLTARTTGGGKLRLLVQDQATGKAAFDSGYLDNGQ
Sbjct: 375 SEVVNYANRGIAGINWAKPVTGRNYKLTARTTGGGKLRLLVQDQATGKAAFDSGYLDNGQ 434

Query: 421 SKTFTWTATKPALAVYARSGGTGQPSNVGAELISAD 456
           SKTFTWTATKPALAVYARSGG+GQPS VGAELISAD
Sbjct: 435 SKTFTWTATKPALAVYARSGGSGQPSTVGAELISAD 470


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.130    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,613,920
Number of extensions: 74465
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 368
Effective length of database: 1,203,190
Effective search space: 442773920
Effective search space used: 442773920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 132 (55.5 bits)