BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0110.p
         (203 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312990|ref|YP_003777082.1| signal peptide protein [Herbasp...   407   e-115
gi|300310091|ref|YP_003774183.1| outer membrane protein and rela...    85   3e-18
gi|300313671|ref|YP_003777763.1| OmpA family protein [Herbaspiri...    85   4e-18
gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum ser...    85   5e-18

>gi|300312990|ref|YP_003777082.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score =  407 bits (1045), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/203 (100%), Positives = 203/203 (100%)

Query: 1   MNKLAKLVFAAASAAIALSATAQETKDIKVRPNSLYLQDGRDVVTRSGYGLCWQTAYVNG 60
           MNKLAKLVFAAASAAIALSATAQETKDIKVRPNSLYLQDGRDVVTRSGYGLCWQTAYVNG
Sbjct: 1   MNKLAKLVFAAASAAIALSATAQETKDIKVRPNSLYLQDGRDVVTRSGYGLCWQTAYVNG 60

Query: 61  PCEEPPAPAPVAAAAPAAPAAAAAPTSEKVTYAADAFFDFDKATLKPAGKAKLDELVGNL 120
           PCEEPPAPAPVAAAAPAAPAAAAAPTSEKVTYAADAFFDFDKATLKPAGKAKLDELVGNL
Sbjct: 61  PCEEPPAPAPVAAAAPAAPAAAAAPTSEKVTYAADAFFDFDKATLKPAGKAKLDELVGNL 120

Query: 121 KAINLEVIIAVGHTDSIGSVAYNQKLSVRRAESVKAYLVSKGVEANRVYTEGKGKSQPVA 180
           KAINLEVIIAVGHTDSIGSVAYNQKLSVRRAESVKAYLVSKGVEANRVYTEGKGKSQPVA
Sbjct: 121 KAINLEVIIAVGHTDSIGSVAYNQKLSVRRAESVKAYLVSKGVEANRVYTEGKGKSQPVA 180

Query: 181 DNKTAAGRAKNRRVEIEVVGTRK 203
           DNKTAAGRAKNRRVEIEVVGTRK
Sbjct: 181 DNKTAAGRAKNRRVEIEVVGTRK 203


>gi|300310091|ref|YP_003774183.1| outer membrane protein and related
           peptidoglycan-associated (lipo)proteins [Herbaspirillum
           seropedicae SmR1]
          Length = 271

 Score = 85.1 bits (209), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 65/101 (64%)

Query: 98  FDFDKATLKPAGKAKLDELVGNLKAINLEVIIAVGHTDSIGSVAYNQKLSVRRAESVKAY 157
           F+  +ATL P GK  LDE+   +  +    +  +G+TD+ G  A N  LS+ RA++VKAY
Sbjct: 169 FESGQATLTPEGKRILDEIAATMLKLKGRHVEIIGNTDNEGLRASNISLSLARADAVKAY 228

Query: 158 LVSKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEIEV 198
           L +KGV+ + + T G+G  +PVA N TA GRAKNRR+E  +
Sbjct: 229 LGAKGVDESLLSTSGQGPDRPVASNATAEGRAKNRRIEFRI 269


>gi|300313671|ref|YP_003777763.1| OmpA family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score = 85.1 bits (209), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 62/110 (56%)

Query: 89  KVTYAADAFFDFDKATLKPAGKAKLDELVGNLKAINLEVIIAVGHTDSIGSVAYNQKLSV 148
           K+   +D  FD  +A +KP  +  LD     L       +  VGHTD+ GS A N  LS+
Sbjct: 103 KLEIPSDISFDTGRADIKPEMRPVLDRFAATLVENPATTVTIVGHTDNTGSDAINDPLSL 162

Query: 149 RRAESVKAYLVSKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEIEV 198
           +RA   + YL S+GV ANR   +G+G  +P+  N + A RA+NRRVEI V
Sbjct: 163 QRASRTRDYLSSRGVAANRFSIQGRGSHEPLVANTSDANRARNRRVEIFV 212


>gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 267

 Score = 84.7 bits (208), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 65/101 (64%)

Query: 98  FDFDKATLKPAGKAKLDELVGNLKAINLEVIIAVGHTDSIGSVAYNQKLSVRRAESVKAY 157
           F+  +ATL P GK  LDE+   +  +    +  +G+TD+ G  A N  LS+ RA++VKAY
Sbjct: 165 FESGRATLTPEGKRILDEIAATMLQLKGRRVEIIGNTDNEGLRASNISLSLARADAVKAY 224

Query: 158 LVSKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEIEV 198
           L +KGV+ + + T G+G  +PVA N T+ GRA+NRR+E  +
Sbjct: 225 LSTKGVDDSLLTTSGQGPDRPVASNATSEGRARNRRIEFRI 265


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.126    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 412,488
Number of extensions: 11743
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 5
Length of query: 203
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,236,335
Effective search space: 150832870
Effective search space used: 150832870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)