BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0108.p
         (218 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312992|ref|YP_003777084.1| phosphoglycolate phosphatase [H...   434   e-123
gi|300313180|ref|YP_003777272.1| phosphoglycolate phosphatase [H...    89   2e-19

>gi|300312992|ref|YP_003777084.1| phosphoglycolate phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 218

 Score =  434 bits (1117), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/218 (99%), Positives = 217/218 (99%)

Query: 1   MPLRPPRAILFDLDGTLADTAPDLAAAANFLRQQRGLEDAPYEQLRPVASAGARGLIGAA 60
           MPLRPPRAILFDLDGTLADTAPDLAAAANFLRQQRGLEDAPYEQLRPVASAGARGLIGAA
Sbjct: 1   MPLRPPRAILFDLDGTLADTAPDLAAAANFLRQQRGLEDAPYEQLRPVASAGARGLIGAA 60

Query: 61  LGIRPGEDEYEELRVRFLDRYQANMTTHSRLFDGIPELLLQLEARGIAWGIVTNKAARFT 120
           LGIRPGEDEYEELRVRFLDRYQANMTTHSRLFDGIPELL+QLEARGIAWGIVTNKAARFT
Sbjct: 61  LGIRPGEDEYEELRVRFLDRYQANMTTHSRLFDGIPELLVQLEARGIAWGIVTNKAARFT 120

Query: 121 DVLAPQIGLGHASCIVSGDTTPHSKPHPAPLLEAARRLQLTPEDCWYVGDDLRDIQAGKA 180
           DVLAPQIGLGHA CIVSGDTTPHSKPHPAPLLEAARRLQLTPEDCWYVGDDLRDIQAGKA
Sbjct: 121 DVLAPQIGLGHAGCIVSGDTTPHSKPHPAPLLEAARRLQLTPEDCWYVGDDLRDIQAGKA 180

Query: 181 AAMPTIAAAWGYCGHTEPAGWEADALLHAPLQILTLLD 218
           AAMPTIAAAWGYCGHTEPAGWEADALLHAPLQILTLLD
Sbjct: 181 AAMPTIAAAWGYCGHTEPAGWEADALLHAPLQILTLLD 218


>gi|300313180|ref|YP_003777272.1| phosphoglycolate phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 226

 Score = 89.4 bits (220), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 7   RAILFDLDGTLADTAPDLAAAANFLRQQRGLEDAPYEQLRPVASAGARGLIGAALGIRPG 66
           +A + DLDGT+ DTA D   A N +R   GL     E +      G   LI   L +   
Sbjct: 8   KAAIIDLDGTMLDTAADFHVAVNRMRDDLGLTPLSQETIVNFVGKGTENLIRRVLAVDYA 67

Query: 67  EDE----YEELRVRFLDRYQANMTTHSRLFDGIPELLLQLEARGIAWGIVTNKAARFTDV 122
           EDE    +++      + Y A    +S L+ G+ E L  L  +G+    VTNK   F   
Sbjct: 68  EDEAAQYFQQALAACTEHYLAINGDYSSLYPGVLEGLQALRNKGLRLACVTNKPLAFAVP 127

Query: 123 LAPQIGLGHASCIV-SGDTTPHSKPHPAPLLEAARRLQLTPEDCWYVGDDLRDIQAGKAA 181
           L  + GL     IV  GD+ P  KP P PLL+  +   L P     +GD   D QA +AA
Sbjct: 128 LLQKKGLRDFFEIVYGGDSFPKKKPDPMPLLQVCQDFALAPAQVVAIGDSSNDAQAARAA 187

Query: 182 AMPTIAAAWGYCGHTE 197
               +   +GY  H E
Sbjct: 188 GCRVLNVPYGY-NHGE 202


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 658,683
Number of extensions: 26563
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 218
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,231,600
Effective search space: 167497600
Effective search space used: 167497600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)