BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0107.p (1128 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312993|ref|YP_003777085.1| hypothetical protein Hsero_3699... 2149 0.0 >gi|300312993|ref|YP_003777085.1| hypothetical protein Hsero_3699 [Herbaspirillum seropedicae SmR1] Length = 1124 Score = 2149 bits (5569), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1108/1128 (98%), Positives = 1112/1128 (98%), Gaps = 4/1128 (0%) Query: 1 MSKPGLASLTKQPAWQRLRRPLKWLAWMLAVLLALAALSWAALPALVRKLAVEQTQAQLG 60 MSKPGLASLTKQPAWQRLRRPLKWLAWMLAVLLALAALSWAALPALVRKLAVEQTQAQLG Sbjct: 1 MSKPGLASLTKQPAWQRLRRPLKWLAWMLAVLLALAALSWAALPALVRKLAVEQTQAQLG 60 Query: 61 RKLDVGAVSFNPFRLALQVSDITLYEADGKTPFLAVQSLLVDASSASLLRLAPVLDEVRL 120 RKLDVGAVSFNPFRLALQVSDITLYEADGKTPFLAVQSLLVDASSASLL LAPVLDEVRL Sbjct: 61 RKLDVGAVSFNPFRLALQVSDITLYEADGKTPFLAVQSLLVDASSASLLCLAPVLDEVRL 120 Query: 121 SKPQLRVQRIDADQGGHYNFSDILERLAAQPKSEGQARFSLANVQLQDGAIHFEDKLTGK 180 SKPQLRVQRIDADQGGHYNFSDILERLAAQPKSEGQARFSLANVQLQDGAIHFEDKLTGK Sbjct: 121 SKPQLRVQRIDADQGGHYNFSDILERLAAQPKSEGQARFSLANVQLQDGAIHFEDKLTGK 180 Query: 181 TIDIAALQVGLPFISNLPGNIDSFVQPQLSATINGTPLHLKGRSKPFSSTLESAFAIDIE 240 TIDIAALQVGLPFISNLPGNIDSFVQPQLSATINGTPLHLKGRSKPFSSTLESAFAIDIE Sbjct: 181 TIDIAALQVGLPFISNLPGNIDSFVQPQLSATINGTPLHLKGRSKPFSSTLESAFAIDIE 240 Query: 241 RLDLVSYLPFVPMELPVLLQSGHLSTHLDLGFNRQQDKPTITLAGDVVLDDIAVADRTKA 300 RLDLVSYLPFVPMELPVLLQSGHLST LDLGFNRQQDKPTITLAGDVVLDDIAVADR KA Sbjct: 241 RLDLVSYLPFVPMELPVLLQSGHLSTRLDLGFNRQQDKPTITLAGDVVLDDIAVADRAKA 300 Query: 301 PLLKARQLAVKLGQFDVLAASGQISQVTLEQPQVWASMNGRGEINWVRALAAPATGKRTA 360 PLLKARQLAVKLGQFDVLAASGQISQVTLEQPQ+WASMNGRGEINWVRALAAPATGKRTA Sbjct: 301 PLLKARQLAVKLGQFDVLAASGQISQVTLEQPQIWASMNGRGEINWVRALAAPATGKRTA 360 Query: 361 PAPAASPAAPPAQASAIVLQQLNVRDGRVNWRDEANASPAQNVQLSSIEIDAAQLSTAAD 420 + AA+ A ASAIVLQQLNVRDGRVNWRDEANASPAQNVQLS IEIDAAQLSTAA+ Sbjct: 361 ASQAATSAQ----ASAIVLQQLNVRDGRVNWRDEANASPAQNVQLSGIEIDAAQLSTAAN 416 Query: 421 AQPATLKVTAIENGHGRLGFEGQVAPLKPAVAGKLTLAGIDLAGYRNYLHRAPVSGLAGK 480 AQPATLKVTAIENGHGRLGFEGQVAPLKPAVAGKLTLAGIDLAGYRNYLHRAPVSGLAGK Sbjct: 417 AQPATLKVTAIENGHGRLGFEGQVAPLKPAVAGKLTLAGIDLAGYRNYLHRAPVSGLAGK 476 Query: 481 LSGNSTLQWRDGHLKLDDSTVELAGLQLTPEGKSTQPISVESLKLRVQNVTDAFDQAMPL 540 LSGNSTLQWRDGHLKLDDSTVELA LQLTPEGKSTQPISVESLKLRVQNVTD FDQAMPL Sbjct: 477 LSGNSTLQWRDGHLKLDDSTVELASLQLTPEGKSTQPISVESLKLRVQNVTDTFDQAMPL 536 Query: 541 TLQARLDKNGSADITGQIAPHLKNADLDLDLRELPIAPVQGYFTDILNVSISNGALSAKG 600 TLQARLDKNGSADITGQIAPHLKNADLDLDLRELPIAPVQGYFTDILNVSISNGALSAKG Sbjct: 537 TLQARLDKNGSADITGQIAPHLKNADLDLDLRELPIAPVQGYFTDILNVSISNGALSAKG 596 Query: 601 KLALTLPLQQQKFALDYKGNAAIANLRMQDKLTSTDFLRWRTLTLAGINAKLGGRAQIAL 660 KLALTLPLQQQKFALDYKGNAAIANLRMQDKLTSTDFLRWRTLTLAGINAKLGGRAQIAL Sbjct: 597 KLALTLPLQQQKFALDYKGNAAIANLRMQDKLTSTDFLRWRTLTLAGINAKLGGRAQIAL 656 Query: 661 DKVTLNSFYARAILSEKGRLNLQDILVADGQPQGSITDDSKKDDKENRRDSSRKSVSSTP 720 DKVTLNSFYARAILSEKGRLNLQDILVADGQPQGSITDDSKKDDKENRRDSSRKSVSSTP Sbjct: 657 DKVTLNSFYARAILSEKGRLNLQDILVADGQPQGSITDDSKKDDKENRRDSSRKSVSSTP 716 Query: 721 VTSPAARADAPIVRVGQVVLEGGNINYTDNFVKPNYTANMTGLAGSIGEISSEKPQPAPV 780 VTSPAARADAPIVRVGQVVLEGGNINYTDNFVKPNYTANMTGLAGSIGEISSEKPQPAPV Sbjct: 717 VTSPAARADAPIVRVGQVVLEGGNINYTDNFVKPNYTANMTGLAGSIGEISSEKPQPAPV 776 Query: 781 NISGKIDNDAPLQISGALNPLFKPMYLDLKASANGVQLPRLTPYSAKYAGYPITKGKLSM 840 NISGKIDNDAPLQISGALNPLFKPMYLDLKASANGVQLPRLTPYSAKYAGYPITKGKLSM Sbjct: 777 NISGKIDNDAPLQISGALNPLFKPMYLDLKASANGVQLPRLTPYSAKYAGYPITKGKLSM 836 Query: 841 DVQYKIENDKLVAQNDLRIEQLTFGERVDSPNATNLPVMLAVSLLKDRNGNINLNLPISG 900 DVQYKIENDKLVAQNDLRIEQLTFGERVDSPNATNLPVMLAVSLLKDRNGNINLNLPISG Sbjct: 837 DVQYKIENDKLVAQNDLRIEQLTFGERVDSPNATNLPVMLAVSLLKDRNGNINLNLPISG 896 Query: 901 SLSDPEFSVGGIIVRVFVNLIAKAVTSPFALIGSMFRSDENIGELRYIEFPAGSAEIDAE 960 SLSDPEFSVGGIIVRVFVNLIAKAVTSPFALIGSMFRSDENIGELRYIEFPAGSAEIDAE Sbjct: 897 SLSDPEFSVGGIIVRVFVNLIAKAVTSPFALIGSMFRSDENIGELRYIEFPAGSAEIDAE 956 Query: 961 VRKKLDALGYVLHERPGIKLDIMGRVDPQVDDQGLRKEALERQMRGYKRAELIAREGQPS 1020 VRKKLDALGYVLHERPGIKLDIMGRVDPQVDDQGLRKEALERQMRGYKRAELIAREGQPS Sbjct: 957 VRKKLDALGYVLHERPGIKLDIMGRVDPQVDDQGLRKEALERQMRGYKRAELIAREGQPS 1016 Query: 1021 DPVRLTDAERSKYLERAYKEAKFDKPRNMIGLARSLPPAEMEKLILEHTQVSPDDLRSLA 1080 PVRLTD ERSKYLERAYKEAKFDKPRNMIGLARSLPPAEMEKLILEHTQVSPDDLRSLA Sbjct: 1017 GPVRLTDVERSKYLERAYKEAKFDKPRNMIGLARSLPPAEMEKLILEHTQVSPDDLRSLA 1076 Query: 1081 QRRADQVRNYLQEQSVIEPARIFLIAPKLDGAGIPDKEPKARVDLTIQ 1128 QRRADQVRNYLQEQSVIEPARIFLIAPKLDGAGIPDKEPKARVDLTIQ Sbjct: 1077 QRRADQVRNYLQEQSVIEPARIFLIAPKLDGAGIPDKEPKARVDLTIQ 1124 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,381,843 Number of extensions: 144771 Number of successful extensions: 468 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 463 Number of HSP's successfully gapped: 1 Length of query: 1128 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1032 Effective length of database: 1,165,310 Effective search space: 1202599920 Effective search space used: 1202599920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 136 (57.0 bits)