BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0100.p
         (183 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312999|ref|YP_003777091.1| transmembrane protein [Herbaspi...   357   e-100

>gi|300312999|ref|YP_003777091.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 188

 Score =  357 bits (915), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MPRLATLAGPLLILLYPLLIWYAHGKLEPRTLALSLVLIAVVRLFATRTGGPLRWMGVAA 60
           MPRLATLAGPLLILLYPLLIWYAHGKLEPRTLALSLVLIAVVRLFATRTGGPLRWMGVAA
Sbjct: 6   MPRLATLAGPLLILLYPLLIWYAHGKLEPRTLALSLVLIAVVRLFATRTGGPLRWMGVAA 65

Query: 61  LALAAPAVYWNALLPLKLYPVAISAGMLALFGYSLYKPPTVIERMARLGSPDLPLFVIAY 120
           LALAAPAVYWNALLPLKLYPVAISAGMLALFGYSLYKPPTVIERMARLGSPDLPLFVIAY
Sbjct: 66  LALAAPAVYWNALLPLKLYPVAISAGMLALFGYSLYKPPTVIERMARLGSPDLPLFVIAY 125

Query: 121 TRRVTQVWCLFFAINGSIALGTALWCSPAVWSMYTGVISYIAMGLLFAGEYLVRLYVRRQ 180
           TRRVTQVWCLFFAINGSIALGTALWCSPAVWSMYTGVISYIAMGLLFAGEYLVRLYVRRQ
Sbjct: 126 TRRVTQVWCLFFAINGSIALGTALWCSPAVWSMYTGVISYIAMGLLFAGEYLVRLYVRRQ 185

Query: 181 HHA 183
           HHA
Sbjct: 186 HHA 188


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.143    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 530,541
Number of extensions: 21089
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,241,070
Effective search space: 127830210
Effective search space used: 127830210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 127 (53.5 bits)