BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0099.p
         (502 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313000|ref|YP_003777092.1| AMP-binding enzyme family prote...   830   0.0  
gi|300312999|ref|YP_003777091.1| transmembrane protein [Herbaspi...   176   3e-45

>gi|300313000|ref|YP_003777092.1| AMP-binding enzyme family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 586

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/422 (97%), Positives = 415/422 (98%)

Query: 1   MTAAPRLDLLQLPFLAFAGADVIGWRDGVAVTHASWRAELRRWQHLVQTTPGQRMALFHH 60
           MTAAPRLDLLQLPFLAFAGADVIGWRDGVAVTHASWRAELRRWQHLVQTTPGQRMALFHH
Sbjct: 1   MTAAPRLDLLQLPFLAFAGADVIGWRDGVAVTHASWRAELRRWQHLVQTTPGQRMALFHH 60

Query: 61  DTLQFAAALFAIWLAGKTAYLPSDALPDTCRQLQGEVDAFLGEFGAHCPALHPAGDAAEG 120
           DTLQFAAALFAIWLAGKTAYLPSDALPDTCRQLQGEVDAFLGEFGAHCPALHPAGDAAEG
Sbjct: 61  DTLQFAAALFAIWLAGKTAYLPSDALPDTCRQLQGEVDAFLGEFGAHCPALHPAGDAAEG 120

Query: 121 DTPDAWPALRADFAGLVVYTSGSTGLAQAIPKQLGQMANEVATLEALFGAIVGEAEVIAT 180
           DTPDAWP LRADF GLVVYTSGSTGLAQAIPKQLGQMANEVATLEALFGAIVGEAEVIAT
Sbjct: 121 DTPDAWPTLRADFGGLVVYTSGSTGLAQAIPKQLGQMANEVATLEALFGAIVGEAEVIAT 180

Query: 181 VSHQHIYGLLFKVLWALCAGRPVHAGSAFFPEDLQRMAGARPWILLSSPAHLKRLPEQST 240
           VSHQHIYGLLFKVLWALCAGRPVHAGSAFFPEDLQRMAGARPWILLSSPAHLKRLPEQ  
Sbjct: 181 VSHQHIYGLLFKVLWALCAGRPVHAGSAFFPEDLQRMAGARPWILLSSPAHLKRLPEQGA 240

Query: 241 QPDARQLRAIFSSGGPLPAQAAADSARLLGQRPLEIYGSSETGGIAWRQPQTDPLQRQEH 300
           QPDARQLRAIFSSGGPLPAQAAADSARLLGQRPLEIYGSSETGGIAWRQPQTDPLQRQEH
Sbjct: 241 QPDARQLRAIFSSGGPLPAQAAADSARLLGQRPLEIYGSSETGGIAWRQPQTDPLQRQEH 300

Query: 301 WQAMPGVEVRLGAEGELEVRSPHLPDSAWFGMADRAALVPGQPGQFELRGRSDRIVKLEE 360
           WQAMPGVEVRLGAEGELEVRSPHLPDSAWFGMADRAALVPGQPGQFELRGRSDRIVKLEE
Sbjct: 301 WQAMPGVEVRLGAEGELEVRSPHLPDSAWFGMADRAALVPGQPGQFELRGRSDRIVKLEE 360

Query: 361 KRISLTRIEQLLNASPLVEDVRVIVHQGRRARQFIAAFVVPSAPAHTMLAAQGKLALTTV 420
           KRISLTRIEQLLNASPLVEDVRVIVHQGRRARQFIAAFVVPSAPAH MLAAQGKLAL T 
Sbjct: 361 KRISLTRIEQLLNASPLVEDVRVIVHQGRRARQFIAAFVVPSAPAHAMLAAQGKLALNTA 420

Query: 421 IE 422
           ++
Sbjct: 421 LK 422


>gi|300312999|ref|YP_003777091.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 188

 Score =  176 bits (447), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/84 (100%), Positives = 84/84 (100%)

Query: 419 TVIERMARLGSPDLPLFVIAYTRRVTQVWCLFFAINGSIALGTALWCSPAVWSMYTGVIS 478
           TVIERMARLGSPDLPLFVIAYTRRVTQVWCLFFAINGSIALGTALWCSPAVWSMYTGVIS
Sbjct: 105 TVIERMARLGSPDLPLFVIAYTRRVTQVWCLFFAINGSIALGTALWCSPAVWSMYTGVIS 164

Query: 479 YIAMGLLFAGEYLVRLYVRRQHHA 502
           YIAMGLLFAGEYLVRLYVRRQHHA
Sbjct: 165 YIAMGLLFAGEYLVRLYVRRQHHA 188


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,831,032
Number of extensions: 87285
Number of successful extensions: 317
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 2
Length of query: 502
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 413
Effective length of database: 1,198,455
Effective search space: 494961915
Effective search space used: 494961915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 133 (55.8 bits)