BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0097.p
         (530 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313000|ref|YP_003777092.1| AMP-binding enzyme family prote...  1029   0.0  

>gi|300313000|ref|YP_003777092.1| AMP-binding enzyme family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 586

 Score = 1029 bits (2661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/532 (97%), Positives = 522/532 (98%), Gaps = 2/532 (0%)

Query: 1   MALFHHDTLQFAAALFAIWLAGKTAYLPSDALPDTCRQLQGEVDAFLGEFGAHCPALHPA 60
           MALFHHDTLQFAAALFAIWLAGKTAYLPSDALPDTCRQLQGEVDAFLGEFGAHCPALHPA
Sbjct: 55  MALFHHDTLQFAAALFAIWLAGKTAYLPSDALPDTCRQLQGEVDAFLGEFGAHCPALHPA 114

Query: 61  GDAAEGDTPDAWPALRADFAGLVVYTSGSTGLAQAIPKQLGQMANEVATLEALFGAIVGE 120
           GDAAEGDTPDAWP LRADF GLVVYTSGSTGLAQAIPKQLGQMANEVATLEALFGAIVGE
Sbjct: 115 GDAAEGDTPDAWPTLRADFGGLVVYTSGSTGLAQAIPKQLGQMANEVATLEALFGAIVGE 174

Query: 121 AEVIATVSHQHIYGLLFKVLWALCAGRPVHAGSAFFPEDLQRMAGARPWILLSSPAHLKR 180
           AEVIATVSHQHIYGLLFKVLWALCAGRPVHAGSAFFPEDLQRMAGARPWILLSSPAHLKR
Sbjct: 175 AEVIATVSHQHIYGLLFKVLWALCAGRPVHAGSAFFPEDLQRMAGARPWILLSSPAHLKR 234

Query: 181 LPEQSTQPDARQLRAIFSSGGPLPAQAAADSARLLGQRPLEIYGSSETGGIAWRQPQTDP 240
           LPEQ  QPDARQLRAIFSSGGPLPAQAAADSARLLGQRPLEIYGSSETGGIAWRQPQTDP
Sbjct: 235 LPEQGAQPDARQLRAIFSSGGPLPAQAAADSARLLGQRPLEIYGSSETGGIAWRQPQTDP 294

Query: 241 LQRQEHWQAMPGVEVRLGAEGELEVRSPHLPDSAWFGMADRAALVPGQPGQFELRGRSDR 300
           LQRQEHWQAMPGVEVRLGAEGELEVRSPHLPDSAWFGMADRAALVPGQPGQFELRGRSDR
Sbjct: 295 LQRQEHWQAMPGVEVRLGAEGELEVRSPHLPDSAWFGMADRAALVPGQPGQFELRGRSDR 354

Query: 301 IVKLEEKRISLTRIEQLLNASPLVEDVRVIVHQGRRARQFIAAFVVPSAPAHTMLAAQGK 360
           IVKLEEKRISLTRIEQLLNASPLVEDVRVIVHQGRRARQFIAAFVVPSAPAH MLAAQGK
Sbjct: 355 IVKLEEKRISLTRIEQLLNASPLVEDVRVIVHQGRRARQFIAAFVVPSAPAHAMLAAQGK 414

Query: 361 LAL--PLKAVLAGAIESIAVPRLWRYLPALPVNPQGKVTLSALTALLESPAAVSVVSAPT 418
           LAL   LKAVLAGAIESIA+PRLWRYLPALPVNPQGKVTLSALTALLESPAA  VVSAPT
Sbjct: 415 LALNTALKAVLAGAIESIALPRLWRYLPALPVNPQGKVTLSALTALLESPAAAPVVSAPT 474

Query: 419 LPQVSELERSSEHVQLALDIPADLLYFRGHFPGSPILPGVVQTDWSLALGRRYFDLPPHF 478
           LPQVSELERSSEHVQLALDIPADLLYFRGHFPGSPILPGVVQTDWSLALGRRYFDLPPHF
Sbjct: 475 LPQVSELERSSEHVQLALDIPADLLYFRGHFPGSPILPGVVQTDWSLALGRRYFDLPPHF 534

Query: 479 LGLQALKFQRVITPGMRVLLDLQFEAGKSQLSFRLHSEGGQHASGRFLLGAA 530
           LGLQALKFQRVITPGMRVLLDLQFEAGKSQLSFRLHSEGGQHASGRFLLGAA
Sbjct: 535 LGLQALKFQRVITPGMRVLLDLQFEAGKSQLSFRLHSEGGQHASGRFLLGAA 586


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,926,720
Number of extensions: 91960
Number of successful extensions: 363
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 3
Length of query: 530
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 440
Effective length of database: 1,193,720
Effective search space: 525236800
Effective search space used: 525236800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)