BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0091.p
         (796 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313006|ref|YP_003777098.1| exporter protein [Herbaspirillu...  1525   0.0  

>gi|300313006|ref|YP_003777098.1| exporter protein [Herbaspirillum
           seropedicae SmR1]
          Length = 810

 Score = 1525 bits (3948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 783/796 (98%), Positives = 788/796 (98%)

Query: 1   LALAWLLAVLLVAGHNAWLWLGQRASPDTDILALLPGTSSKDAVRQQAFSHMVDSAQQKL 60
           LALAWLLAVLLVAGHNAWLWLGQRASPDTDILALLPG SSKDAVRQQAFSHMVDSAQQKL
Sbjct: 15  LALAWLLAVLLVAGHNAWLWLGQRASPDTDILALLPGASSKDAVRQQAFSHMVDSAQQKL 74

Query: 61  VVLVGDRDWKRAQAGAQAYLTVLHVHADLVAPINDDSAQWQSQWLGSLDRSRTLLLGDPQ 120
           VVLVGDRDWKRAQAGAQAYLTVLH HADLVAPINDDSAQWQSQWLGSLDRSR+LLLGD Q
Sbjct: 75  VVLVGDRDWKRAQAGAQAYLTVLHAHADLVAPINDDSAQWQSQWLGSLDRSRSLLLGDAQ 134

Query: 121 RAQLATTTAQQWSQRALGGLYGAFGGPRLGAWQDDPFGLFGDWVQERARETPVRPRNGML 180
           RAQLATTTAQQW+QRALGGLYGAFGGPRLGAWQDDPFGLFGDWVQERARETPVRPR+GML
Sbjct: 135 RAQLATTTAQQWNQRALGGLYGAFGGPRLGAWQDDPFGLFGDWVQERARETPVRPRDGML 194

Query: 181 FVERDGVSYALLLLELKAPAFSMQAQEQVVPLLAQARRAARTQAGEVVSGGVVLHAAAAS 240
           FVERDGVSYALLLLELKAPAFSMQAQEQVVPLLAQARRAARTQAGEVVSGGVVLHAAAAS
Sbjct: 195 FVERDGVSYALLLLELKAPAFSMQAQEQVVPLLAQARRAARTQAGEVVSGGVVLHAAAAS 254

Query: 241 AQASSESATIGAGSLLGILLLMWLTFRSLKPILYIALSIAVGCLGALSVSMLVFGKIHLL 300
           AQASSESATIGAGSLLGILLLMWLTFRSLKPILYIALSIAVGCLGALSVSMLVFGKIHLL
Sbjct: 255 AQASSESATIGAGSLLGILLLMWLTFRSLKPILYIALSIAVGCLGALSVSMLVFGKIHLL 314

Query: 301 TLVFGASLIGIAQDYGIYFLCARLAAPATQDSATLLRRLLPGLALMLLAALIGYLGMALT 360
           TLVFGASLIGIAQDYGIYFLCARLAAPATQDSATLLRRLLPGLALMLLAALIGYLGMALT
Sbjct: 315 TLVFGASLIGIAQDYGIYFLCARLAAPATQDSATLLRRLLPGLALMLLAALIGYLGMALT 374

Query: 361 PFPGLQQMAVFSALGLVFAWLTVACWFPQLIGPQTLRATPRAQGFGQSIARWPDLLGGFA 420
           PFPGLQQMAVFSALGLVFAWLTVACWFPQLIGPQTL ATPRAQGFGQSIARWPDLLGGFA
Sbjct: 375 PFPGLQQMAVFSALGLVFAWLTVACWFPQLIGPQTLCATPRAQGFGQSIARWPDLLGGFA 434

Query: 421 WHLVLPAAVALIGLAIAGVARLHSSDDIRALQKSPPELLQDQMRISQLLELAAPVQFYLV 480
           WHLVLPAAVALIGLAIAGVARLHSSDDIRALQKSPPELLQDQMRISQLLELAAPVQFYLV
Sbjct: 435 WHLVLPAAVALIGLAIAGVARLHSSDDIRALQKSPPELLQDQMRISQLLELAAPVQFYLV 494

Query: 481 RGASAQAVLQQEEALREKLQPLVERKLITGVQAVSNWAPSQQRQQDNLALLRRALLERQG 540
           RGASA+AVLQQEEALREKLQ LV+RKLITGVQAVSNWAPSQQRQQDNLALLRRALLE QG
Sbjct: 495 RGASAEAVLQQEEALREKLQALVQRKLITGVQAVSNWAPSQQRQQDNLALLRRALLEPQG 554

Query: 541 ESPDAVTLTAQAIGESPQWAQALRQRMLDKTQPITPEEFLATPAGAASRHLWLGQVDGQF 600
           ESPDAVTLTAQAIGESPQWAQALRQRMLDKTQPITPEEFLATPAGAASRHLWLGQVDGQF
Sbjct: 555 ESPDAVTLTAQAIGESPQWAQALRQRMLDKTQPITPEEFLATPAGAASRHLWLGQVDGQF 614

Query: 601 ASIVALRGLTDYRQLGQLAAVAEGMPGVQWVDKVGEISSVLRQYRIYMGWALLCAYAAIF 660
           ASIVALRGLTDYRQLGQLAAVAEGMPGVQWVDKVGEISSVLRQYRIYMGWALLCAYAAIF
Sbjct: 615 ASIVALRGLTDYRQLGQLAAVAEGMPGVQWVDKVGEISSVLRQYRIYMGWALLCAYAAIF 674

Query: 661 ALLALRYRRRAWRALAPPLLASLLTLGLFGWLGQPLQLFHVLAGLLVLGLGVDYGIFLLE 720
           ALLALRYRRRAWRALAPPLLASLLTLGLFGWLGQPLQLFHVLAGLLVLGLGVDYGIFLLE
Sbjct: 675 ALLALRYRRRAWRALAPPLLASLLTLGLFGWLGQPLQLFHVLAGLLVLGLGVDYGIFLLE 734

Query: 721 SSRDQRPHAWLTVGLSAASALLSFGLLALSHSPPLHAFGLTMLCGMLLVWLLAPLFTHPG 780
           SSRDQRPHAWLTV LSAASALLSFGLLALSHSPPLHAFGLTMLCGMLLVWLLAPLFTHPG
Sbjct: 735 SSRDQRPHAWLTVALSAASALLSFGLLALSHSPPLHAFGLTMLCGMLLVWLLAPLFTHPG 794

Query: 781 PAAHAAPDAQPDKESA 796
           PAAHA PDAQPDKESA
Sbjct: 795 PAAHATPDAQPDKESA 810


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,997,807
Number of extensions: 73901
Number of successful extensions: 411
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 1
Length of query: 796
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 703
Effective length of database: 1,179,515
Effective search space: 829199045
Effective search space used: 829199045
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 134 (56.2 bits)