BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0089.p (399 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein... 796 0.0 gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein... 124 1e-29 gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein... 113 4e-26 >gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 399 Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/399 (99%), Positives = 398/399 (99%) Query: 1 MSLYLNALGMVCPLGSAHDAIRTRLLAGESGLRADARYLDAHGEPLALGAVPDDTRLPED 60 MSLYLNALGMVCPLGSAHDAIRTRLLAG SGLRADARYLDAHGEPLALGAVPDDTRLPED Sbjct: 1 MSLYLNALGMVCPLGSAHDAIRTRLLAGVSGLRADARYLDAHGEPLALGAVPDDTRLPED 60 Query: 61 DHLPLRERSRNNRLALAALQRIRVQVDAAIARYGAERIGIVLGTSTSGIAEGEAAFAARA 120 DHLPLRERSRNNRLALAALQRIRVQVDAAIARYGAERIGIVLGTSTSGIAEGEAAFAARA Sbjct: 61 DHLPLRERSRNNRLALAALQRIRVQVDAAIARYGAERIGIVLGTSTSGIAEGEAAFAARA 120 Query: 121 ASGSFPPGYHYGQQELGSPATALQLTLGTTGPAYVQSSACASSGKAIASAARLLNMGLCD 180 ASGSFPPGYHYGQQELGSPATALQLTLGTTGPAYVQSSACASSGKAIASAARLLNMGLCD Sbjct: 121 ASGSFPPGYHYGQQELGSPATALQLTLGTTGPAYVQSSACASSGKAIASAARLLNMGLCD 180 Query: 181 AVLCGGVDTLCQFTIAGFTALESVSAQRCNPLSLHRQGINIGEGAALFLLTREPAAVQLS 240 AVLCGGVDTLCQFTIAGFTALESVSAQRCNPLSLHRQGINIGEGAALFLLTREPAAVQLS Sbjct: 181 AVLCGGVDTLCQFTIAGFTALESVSAQRCNPLSLHRQGINIGEGAALFLLTREPAAVQLS 240 Query: 241 GWGESSDAYHISAPDPEGRGAQLAIGQALRRAGLTASQIDYINLHGTATPQNDAMESKVV 300 GWGESSDAYHISAPDPEGRGAQLAIGQALRRAGLTASQIDYINLHGTATPQNDAMESKVV Sbjct: 241 GWGESSDAYHISAPDPEGRGAQLAIGQALRRAGLTASQIDYINLHGTATPQNDAMESKVV 300 Query: 301 QALFGLEVPVSSTKPFTGHTLGAASAIEAGLCWLLMQDDNPDGLLPPHLWDGVADPALPA 360 QALFGLEVPVSSTKPFTGHTLGAASAIEAGLCWLLMQDDNPDGLLPPHLWDGVADPALPA Sbjct: 301 QALFGLEVPVSSTKPFTGHTLGAASAIEAGLCWLLMQDDNPDGLLPPHLWDGVADPALPA 360 Query: 361 LAPVQVGQRLGRPLRHVLSNSFAFGGSNVALVFSRGENA 399 LAPVQVGQRLGRPLRHVLSNSFAFGGSNVALVFSRGENA Sbjct: 361 LAPVQVGQRLGRPLRHVLSNSFAFGGSNVALVFSRGENA 399 >gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 414 Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/263 (34%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 147 LGTTGPAYVQSSACASSGKAIASAARLLNMGLCDAVLCGGVDTLCQFTIAGFTALESVSA 206 G TG SSAC S + I A + G A++ GG + LC A F L + S Sbjct: 157 FGITGRIITTSSACTSGSQGIGYAYETIRSGRQLAMVAGGAEELCATEAAVFDTLYATSV 216 Query: 207 QRC------NPLSLHRQGINIGEGAALFLLTREPAA--------VQLSGWGESSDAYHIS 252 + +P R G+ +GEGA +L A ++ G+G +SD H++ Sbjct: 217 RNDTPQVTPSPFDRDRDGLVLGEGAGSLILEDLEHAQARGAHIHAEIVGFGTNSDGAHVT 276 Query: 253 APDPEGRGAQLAIGQALRRAGLTASQIDYINLHGTATPQNDAMESKVVQALFGLEVPVSS 312 +P Q AI AL AGL AS I YIN HGT T Q D E++ +FG P+SS Sbjct: 277 --NPNAATMQAAIQMALDDAGLPASAIGYINAHGTGTRQGDVAETQATARVFGKATPISS 334 Query: 313 TKPFTGHTLGAASAIEAGLCWLLMQDDNPDGLLPPHLWDGVADPALPALAPVQVGQRLGR 372 K + GHTLGA A+EA L +M+ G P + DP L + G Sbjct: 335 LKSYMGHTLGACGALEAWLSIEMMR----HGWFAPTINLQHPDPDCGELDYL-TGNGRAL 389 Query: 373 PLRHVLSNSFAFGGSNVALVFSR 395 +V+SN+FAFGG N +L+F R Sbjct: 390 ECEYVMSNNFAFGGINTSLIFKR 412 >gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 413 Score = 113 bits (282), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 112/417 (26%), Positives = 186/417 (44%), Gaps = 37/417 (8%) Query: 3 LYLNALGMVCPLGSAHDAIRTRLLAGESGLRADARYLDAHGEPLALGAVPDDTRLPEDDH 62 + + LG + P+G+ + + G+SG+ ++ DA P + +D+ Sbjct: 9 VVITGLGCISPVGNNVADTWSAIKEGKSGIATVTKF-DA--TPFTTHFAGEVKGFNIEDY 65 Query: 63 LPLRE-RSRNNRLALAALQRIRVQVDA--AIARYGAERIGIVLGTSTSG---IAEGEAAF 116 +P +E R + + I+ D+ + AERIG+++G+ G I E A Sbjct: 66 IPAKEARHMDTFIHFGMAAGIQAMQDSGLTVTDENAERIGVMIGSGIGGLPLIEETHAEL 125 Query: 117 AARAASGSFPPGYHYGQQELGSPATALQLTLGTTGPAYVQSSACASSGKAIASAARLLNM 176 R P + + + L + G GP +AC + I SAAR++ Sbjct: 126 TNRGPRRISP--FFIPASIINMISGNLSIKFGLKGPNLAIVTACTTGLHCIGSAARMIMY 183 Query: 177 GLCDAVLCGGVDT-LCQFTIAGFTALESVSAQRCNPLS------LHRQGINIGEGAALFL 229 G D ++ GG ++ + I GF + ++S + +P + R G +GEGA + + Sbjct: 184 GDADVMVAGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVLGEGAGVMV 243 Query: 230 LTREPAA--------VQLSGWGESSDAYHISAPDPEGRGAQLAIGQALRRAGLTASQIDY 281 L A +L G+G S DAYH++AP+ +G + + ALR AG+ ++ Y Sbjct: 244 LEEYEHAKARGAKIYAELLGFGMSGDAYHMTAPNLDG--PRRCVLNALRDAGVNPDEVQY 301 Query: 282 INLHGTATPQNDAMESKVVQALFG---LEVPVSSTKPFTGHTLGAASAIEAGLCWLLMQD 338 +N HGT+TP D ES ++A FG ++ V+STK TGH LG A +E L L + + Sbjct: 302 LNAHGTSTPLGDKNESDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLETVLTVLAVHN 361 Query: 339 DNPDGLLPPHLWDGVADPALPALAPVQVGQRLGRPLRHVLSNSFAFGGSNVALVFSR 395 + PP + DP Q + + NSF FGG+N LV + Sbjct: 362 Q----VSPPTMNIFNQDPECD--LDYCANQARDMKIDIAVKNSFGFGGTNGTLVIGK 412 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,207,597 Number of extensions: 50462 Number of successful extensions: 219 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 210 Number of HSP's successfully gapped: 3 Length of query: 399 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 312 Effective length of database: 1,207,925 Effective search space: 376872600 Effective search space used: 376872600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)