BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0086.p (414 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein... 848 0.0 gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein... 204 1e-53 gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein... 125 6e-30 >gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 414 Score = 848 bits (2190), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/414 (99%), Positives = 413/414 (99%) Query: 1 MTRARTERRVVVTGMAGISPIGTDWNSALAQLKSGSNAVQRMPGWDEYVGLHTRLGAPAA 60 MTRARTERRVVVTGMAGISPIGTDWNSALAQLKSGSNAVQRMPGWDEYVGLHTRLGAPAA Sbjct: 1 MTRARTERRVVVTGMAGISPIGTDWNSALAQLKSGSNAVQRMPGWDEYVGLHTRLGAPAA 60 Query: 61 EFSLSDRYNRKTTRSMGRVALMATRASEWALADAGLLDDPLLKSGQLGIAYGSSAGTPNA 120 EFSLS+RYNRKTTRSMGRVALMATRASEWALADAGLLDDPLLKSGQLGIAYGSSAGTPNA Sbjct: 61 EFSLSERYNRKTTRSMGRVALMATRASEWALADAGLLDDPLLKSGQLGIAYGSSAGTPNA 120 Query: 121 IADFAMMFAEKNTRDINANTYLKMMAHTAPVNMGVFFGITGRIITTSSACTSGSQGIGYA 180 IADFAMMFAEKNTRDINANTYLKMMAHTAPVNMGVFFGITGRIITTSSACTSGSQGIGYA Sbjct: 121 IADFAMMFAEKNTRDINANTYLKMMAHTAPVNMGVFFGITGRIITTSSACTSGSQGIGYA 180 Query: 181 YETIRSGRQLAIVAGGAEELCATEAAVFDTLYATSVRNDTPQVTPSPFDRDRDGLVLGEG 240 YETIRSGRQLA+VAGGAEELCATEAAVFDTLYATSVRNDTPQVTPSPFDRDRDGLVLGEG Sbjct: 181 YETIRSGRQLAMVAGGAEELCATEAAVFDTLYATSVRNDTPQVTPSPFDRDRDGLVLGEG 240 Query: 241 AGSLILEDLEHAQARGARIHAEIVGFGTNSDGAHVTNPNAATMQAAIQMALDDAGLPASA 300 AGSLILEDLEHAQARGA IHAEIVGFGTNSDGAHVTNPNAATMQAAIQMALDDAGLPASA Sbjct: 241 AGSLILEDLEHAQARGAHIHAEIVGFGTNSDGAHVTNPNAATMQAAIQMALDDAGLPASA 300 Query: 301 IGYINAHGTGTRQGDVAETQATARVFGKATPISSLKSYMGHTLGACGALEAWLSIEMMRH 360 IGYINAHGTGTRQGDVAETQATARVFGKATPISSLKSYMGHTLGACGALEAWLSIEMMRH Sbjct: 301 IGYINAHGTGTRQGDVAETQATARVFGKATPISSLKSYMGHTLGACGALEAWLSIEMMRH 360 Query: 361 GWFAPTINLQHPDPDCGELDYLTGNGRALECEYVMSNNFAFGGINTSLIFKRWP 414 GWFAPTINLQHPDPDCGELDYLTGNGRALECEYVMSNNFAFGGINTSLIFKRWP Sbjct: 361 GWFAPTINLQHPDPDCGELDYLTGNGRALECEYVMSNNFAFGGINTSLIFKRWP 414 >gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 413 Score = 204 bits (518), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 141/417 (33%), Positives = 212/417 (50%), Gaps = 10/417 (2%) Query: 1 MTRARTERRVVVTGMAGISPIGTDWNSALAQLKSGSNAVQRMPGWDEYVGLHTRLGAPAA 60 M+R R ERRVV+TG+ ISP+G + + +K G + + + +D T Sbjct: 1 MSRTR-ERRVVITGLGCISPVGNNVADTWSAIKEGKSGIATVTKFDA-TPFTTHFAGEVK 58 Query: 61 EFSLSDRYNRKTTRSMGRVALMATRASEWALADAGL-LDDPLLKSGQLGIAYGSSAGTPN 119 F++ D K R M A A+ D+GL + D + ++G+ GS G Sbjct: 59 GFNIEDYIPAKEARHMDTFIHFGMAAGIQAMQDSGLTVTDE--NAERIGVMIGSGIGGLP 116 Query: 120 AIADFAMMFAEKNTRDINANTYLKMMAHTAPVNMGVFFGITGRIITTSSACTSGSQGIGY 179 I + + R I+ + + N+ + FG+ G + +ACT+G IG Sbjct: 117 LIEETHAELTNRGPRRISPFFIPASIINMISGNLSIKFGLKGPNLAIVTACTTGLHCIGS 176 Query: 180 AYETIRSGRQLAIVAGGAEE-LCATEAAVFDTLYATSVRNDTPQVTPSPFDRDRDGLVLG 238 A I G +VAGGAE + F + A S RND P P+D+DRDG VLG Sbjct: 177 AARMIMYGDADVMVAGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVLG 236 Query: 239 EGAGSLILEDLEHAQARGARIHAEIVGFGTNSDGAHVTNPNAATMQAAIQMALDDAGLPA 298 EGAG ++LE+ EHA+ARGA+I+AE++GFG + D H+T PN + + AL DAG+ Sbjct: 237 EGAGVMVLEEYEHAKARGAKIYAELLGFGMSGDAYHMTAPNLDGPRRCVLNALRDAGVNP 296 Query: 299 SAIGYINAHGTGTRQGDVAETQATARVFGK---ATPISSLKSYMGHTLGACGALEAWLSI 355 + Y+NAHGT T GD E+ A FG ++S KS GH LG G LE L++ Sbjct: 297 DEVQYLNAHGTSTPLGDKNESDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLETVLTV 356 Query: 356 EMMRHGWFAPTINLQHPDPDCGELDYLTGNGRALECEYVMSNNFAFGGINTSLIFKR 412 + + PT+N+ + DP+C +LDY R ++ + + N+F FGG N +L+ + Sbjct: 357 LAVHNQVSPPTMNIFNQDPEC-DLDYCANQARDMKIDIAVKNSFGFGGTNGTLVIGK 412 >gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 399 Score = 125 bits (314), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 91/263 (34%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 157 FGITGRIITTSSACTSGSQGIGYAYETIRSGRQLAIVAGGAEELCATEAAVFDTLYATSV 216 G TG SSAC S + I A + G A++ GG + LC A F L + S Sbjct: 147 LGTTGPAYVQSSACASSGKAIASAARLLNMGLCDAVLCGGVDTLCQFTIAGFTALESVSA 206 Query: 217 RNDTPQVTPSPFDRDRDGLVLGEGAGSLILEDLEHAQARGARIHAEIVGFGTNSDGAHVT 276 + +P R G+ +GEGA +L A ++ G+G +SD H++ Sbjct: 207 QRC------NPLSLHRQGINIGEGAALFLLTREPAA--------VQLSGWGESSDAYHIS 252 Query: 277 --NPNAATMQAAIQMALDDAGLPASAIGYINAHGTGTRQGDVAETQATARVFGKATPISS 334 +P Q AI AL AGL AS I YIN HGT T Q D E++ +FG P+SS Sbjct: 253 APDPEGRGAQLAIGQALRRAGLTASQIDYINLHGTATPQNDAMESKVVQALFGLEVPVSS 312 Query: 335 LKSYMGHTLGACGALEAWLSIEMMR----HGWFAPTINLQHPDPDCGELDYL-TGNGRAL 389 K + GHTLGA A+EA L +M+ G P + DP L + G Sbjct: 313 TKPFTGHTLGAASAIEAGLCWLLMQDDNPDGLLPPHLWDGVADPALPALAPVQVGQRLGR 372 Query: 390 ECEYVMSNNFAFGGINTSLIFKR 412 +V+SN+FAFGG N +L+F R Sbjct: 373 PLRHVLSNSFAFGGSNVALVFSR 395 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,301,332 Number of extensions: 56273 Number of successful extensions: 210 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 201 Number of HSP's successfully gapped: 3 Length of query: 414 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 326 Effective length of database: 1,203,190 Effective search space: 392239940 Effective search space used: 392239940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)