BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0082.p (545 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis tra... 1075 0.0 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 756 0.0 gi|300311037|ref|YP_003775129.1| methyl-accepting chemotaxis tra... 574 e-165 gi|300313891|ref|YP_003777983.1| methyl-accepting chemotaxis I p... 555 e-159 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 419 e-118 >gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 1075 bits (2781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 538/545 (98%), Positives = 540/545 (99%) Query: 1 MSGFKNMKIGTKLSLGFALLLTLTIILAGISLFSINRLTGSIKAADDVQVERLLPLYLAR 60 MSGFKNMKIGTKLSLGFALLLTLTIILAGISLFSINRLTGSIKAADDVQVERLLPLYLAR Sbjct: 9 MSGFKNMKIGTKLSLGFALLLTLTIILAGISLFSINRLTGSIKAADDVQVERLLPLYLAR 68 Query: 61 EALDQTGLAARNAYVFRTEADAQKELAIVDEQKQIYLKALKDMEPHFVGHKGFDKVRTGL 120 EALDQTGLAARNAYVFRTEADAQKELAIVDEQKQIYLKALKDMEPHFVGHKGFDKVRTGL Sbjct: 69 EALDQTGLAARNAYVFRTEADAQKELAIVDEQKQIYLKALKDMEPHFVGHKGFDKVRTGL 128 Query: 121 LQMAEELKRPRIYRESGKMEEFRDFLVNECSPLRRQIVLDINKVIEEADADNIKAHQATV 180 LQMAEELKRPRIYRESGKMEEFRDFLVNECSPLRRQIVLDINKVIEEADADNIKAHQ TV Sbjct: 129 LQMAEELKRPRIYRESGKMEEFRDFLVNECSPLRRQIVLDINKVIEEADADNIKAHQTTV 188 Query: 181 DMAAMASSLVAVLTGIVAVISALVAFVITRSLLKQLGGEPAYAADIAQQIASGDLTADVD 240 DMAAMASSLVAVLTGIVAVISALVAFVITRSLLKQLGGEPAYAADIAQQIASGDLTADVD Sbjct: 189 DMAAMASSLVAVLTGIVAVISALVAFVITRSLLKQLGGEPAYAADIAQQIASGDLTADVD 248 Query: 241 AKPGDTTSLLFAIKKMRDSLAAIVGKVREGTHAIEQASVEIATGNMDLSSRTEQQAGALE 300 AKPGDTTSLLFAIKKMRD+LAAIVGKVREGTHAIEQAS EIATGNMDLSSRTEQQAGALE Sbjct: 249 AKPGDTTSLLFAIKKMRDNLAAIVGKVREGTHAIEQASAEIATGNMDLSSRTEQQAGALE 308 Query: 301 ETASAMEELMSTVKQNADNARQASQLAVSASDVASQGGQVVGQVVSTMEGINASSRKIVD 360 ETASAMEELMSTVKQNADNARQASQLAVSASDVASQGGQVVGQVVSTMEGINASSRKIVD Sbjct: 309 ETASAMEELMSTVKQNADNARQASQLAVSASDVASQGGQVVGQVVSTMEGINASSRKIVD 368 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITDLIND 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITDLIND Sbjct: 369 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITDLIND 428 Query: 421 SVGQIEQGSSLVGQAGATMENVVTSVKRVTDVVAEISHASQEQSHGIAQVNLAITHMDEA 480 SVGQIEQGSSLVGQAGATMENVVTSVKRVTDVVAEISHASQEQSHGIAQVNLAITHMDEA Sbjct: 429 SVGQIEQGSSLVGQAGATMENVVTSVKRVTDVVAEISHASQEQSHGIAQVNLAITHMDEA 488 Query: 481 TQQNSALVEEAAAAANSMQTQAEQLAGLVSTFKLAHSPAPVSVSAAVGAMGRRANLPVGR 540 TQQNSALVEEAAAAANSM+TQAEQLAGLVSTFKLAHSPAP VSA VGAMGRRANLPVGR Sbjct: 489 TQQNSALVEEAAAAANSMKTQAEQLAGLVSTFKLAHSPAPGPVSAVVGAMGRRANLPVGR 548 Query: 541 SLALK 545 SLALK Sbjct: 549 SLALK 553 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/539 (75%), Positives = 458/539 (84%), Gaps = 4/539 (0%) Query: 4 FKNMKIGTKLSLGFALLLTLTIILAGISLFSINRLTGSIKAADDVQVERLLPLYLAREAL 63 FK+MKIGTKL+LGF L+ LTI+++GISL SI LT SIKA VQ ++L PLY AREAL Sbjct: 2 FKHMKIGTKLALGFGALVVLTILVSGISLSSIRALTSSIKAVLAVQDQKLAPLYAAREAL 61 Query: 64 DQTGLAARNAYVFRTEADAQKELAIVDEQKQIYLKALKDMEPHFVGHKGFDKVRTGLLQM 123 DQTG+AARNAYVFR++ADAQKELAIVDEQKQ+YLKA+KD+ P F G+K F+KVR+G+LQM Sbjct: 62 DQTGIAARNAYVFRSDADAQKELAIVDEQKQLYLKAIKDLGPLFAGNKEFEKVRSGMLQM 121 Query: 124 AEELKRPRIYRESGKMEEFRDFLVNECSPLRRQIVLDINKVIEEADADNIKAHQATVDMA 183 AEELKRPR+YRESG+ EE+RDFLVNECSPLRRQIV DI V+ + +A+N +A AT MA Sbjct: 122 AEELKRPRLYRESGRSEEYRDFLVNECSPLRRQIVSDIGTVLAQVEAENNRAQDATDKMA 181 Query: 184 AMASSLVAVLTGIVAVISALVAFVITRSLLKQLGGEPAYAADIAQQIASGDLTADVDAKP 243 +A+ VAVLT +V VIS L+A ++TR LLKQLGGEP YAA IAQQIA GDLTA+V K Sbjct: 182 QLAALTVAVLTLVVVVISILIAVLLTRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTKT 241 Query: 244 GDTTSLLFAIKKMRDSLAAIVGKVREGTHAIEQASVEIATGNMDLSSRTEQQAGALEETA 303 GD +SLLFAIK MRDSL +IV +VR+GT IEQAS EIA+GN+DLSSRTEQQA +LEETA Sbjct: 242 GDNSSLLFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETA 301 Query: 304 SAMEELMSTVKQNADNARQASQLAVSASDVASQGGQVVGQVVSTMEGINASSRKIVDIIS 363 SAMEELM+TVKQNADNA+QASQLAVSAS+VASQGG+VV QVV+TM+GINASSRKIVDIIS Sbjct: 302 SAMEELMTTVKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIIS 361 Query: 364 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITDLINDSVG 423 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIT+LINDSV Sbjct: 362 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVS 421 Query: 424 QIEQGSSLVGQAGATMENVVTSVKRVTDVVAEISHASQEQSHGIAQVNLAITHMDEATQQ 483 QIE+GSSLV QAG TMENVV SVKRVTDVVAEIS ASQEQSHGI QVN AITHMDEATQQ Sbjct: 422 QIERGSSLVEQAGQTMENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQ 481 Query: 484 NSALVEEAAAAANSMQTQAEQLAGLVSTFKL----AHSPAPVSVSAAVGAMGRRANLPV 538 NSALVEEAAAAANSM+ QA L+GLV+TF+L A SA A NLP+ Sbjct: 482 NSALVEEAAAAANSMKEQAGALSGLVATFRLDAQQARQSGYSQASAPAHAHHVTGNLPL 540 >gi|300311037|ref|YP_003775129.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 522 Score = 574 bits (1480), Expect = e-165, Method: Compositional matrix adjust. Identities = 320/515 (62%), Positives = 398/515 (77%) Query: 1 MSGFKNMKIGTKLSLGFALLLTLTIILAGISLFSINRLTGSIKAADDVQVERLLPLYLAR 60 M MKIG KLSLGFA L L + L ++ IN L +I A+ ++ E+L PLYLAR Sbjct: 1 MKVLSEMKIGVKLSLGFASQLLLLLALVAAAMLGINSLRETIVYANKLKNEQLEPLYLAR 60 Query: 61 EALDQTGLAARNAYVFRTEADAQKELAIVDEQKQIYLKALKDMEPHFVGHKGFDKVRTGL 120 EALDQTG+AARNAYVF ++ADA+ EL IVDEQK IYL+ L+ +EP GF VR GL Sbjct: 61 EALDQTGIAARNAYVFVSDADAKNELNIVDEQKAIYLQQLQLLEPRLADRAGFAAVREGL 120 Query: 121 LQMAEELKRPRIYRESGKMEEFRDFLVNECSPLRRQIVLDINKVIEEADADNIKAHQATV 180 LQMAEELKRPR YR+SG ME +RDFLVNECSPLRR+IV +IN++I++ A++ A Sbjct: 121 LQMAEELKRPRRYRDSGAMEAYRDFLVNECSPLRRKIVANINQLIDQISAESTTAGDTAE 180 Query: 181 DMAAMASSLVAVLTGIVAVISALVAFVITRSLLKQLGGEPAYAADIAQQIASGDLTADVD 240 + A A +++L G+ +I+ ++AF ITRSLL+QLGGEPAYA IAQ+IA GDL DV Sbjct: 181 NAAKQALLFISLLAGLALLIAVVIAFFITRSLLRQLGGEPAYAMGIAQRIAHGDLAVDVV 240 Query: 241 AKPGDTTSLLFAIKKMRDSLAAIVGKVREGTHAIEQASVEIATGNMDLSSRTEQQAGALE 300 + D +SLL+AIK MRDSL+ IV +VR+GT +IE+A EI++GN DLS RTE+QA +LE Sbjct: 241 TRSHDQSSLLYAIKMMRDSLSRIVAQVRQGTDSIERACSEISSGNADLSGRTERQASSLE 300 Query: 301 ETASAMEELMSTVKQNADNARQASQLAVSASDVASQGGQVVGQVVSTMEGINASSRKIVD 360 ETASAME++ S V+Q+ADNA QA+QLA SAS +A +GGQ++G VV+TME I+ SS KIVD Sbjct: 301 ETASAMEQITSAVRQSADNAIQANQLAGSASSIALKGGQMMGDVVATMEDIHHSSVKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITDLIND 420 IISVIDGIAFQTNILALNAAVEAARAGE GRGFAVVASEVR+LAQRSA AAKEI +LI+ Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELISA 420 Query: 421 SVGQIEQGSSLVGQAGATMENVVTSVKRVTDVVAEISHASQEQSHGIAQVNLAITHMDEA 480 SV ++E GS LV AG TM +V SV+ V+ V+AEI+ +S+EQS GI QVN AI+HMDE Sbjct: 421 SVAKVESGSGLVKGAGETMGELVGSVQNVSKVIAEITASSREQSTGIEQVNDAISHMDEV 480 Query: 481 TQQNSALVEEAAAAANSMQTQAEQLAGLVSTFKLA 515 TQQNSALVE++AAAA ++ QA+ LA LVSTFK+A Sbjct: 481 TQQNSALVEQSAAAAEALTAQAQSLARLVSTFKVA 515 >gi|300313891|ref|YP_003777983.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 555 bits (1429), Expect = e-159, Method: Compositional matrix adjust. Identities = 305/519 (58%), Positives = 381/519 (73%), Gaps = 2/519 (0%) Query: 1 MSGFKNMKIGTKLSLGFALLLTLTIILAGISLFSINRLTGSIKAADDVQVERLLPLYLAR 60 M+ +KIGT+L LGF +++ L +IL +L +N ++ +++ + V +L PLY+AR Sbjct: 1 MNQLSKLKIGTQLRLGFGIVIVLMLILITFALMRMNAISAAVQYQETVTDTKLEPLYVAR 60 Query: 61 EALDQTGLAARNAYVFRTEADAQKELAIVDEQKQIYLKALKDMEPHFVGHKGFDKVRTGL 120 EALDQTGLAARNAY+F +A+A KELA++D+QK +YL AL+ +EP G F+K + GL Sbjct: 61 EALDQTGLAARNAYIFHDQAEALKELALLDQQKALYLDALRQLEPVLAGQAQFEKAKAGL 120 Query: 121 LQMAEELKRPRIYRESGKMEEFRDFLVNECSPLRRQIVLDINKVIEEADADNIKAHQATV 180 L MAEELKRPR YRESG+ME + +FLV ECSPLRRQIV DI+ +++ + A Sbjct: 121 LAMAEELKRPRKYRESGQMEAYGEFLVKECSPLRRQIVQDIDALLKVVQRETKAAGDRAD 180 Query: 181 DMAAMASSLVAVLTGIVAVISALVAFVITRSLLKQLGGEPAYAADIAQQIASGDLTADVD 240 + A + L+ I+ +S A++I +SLL QLGGEP YA +I +IA G+L+A VD Sbjct: 181 ALFASSLRLIMACAAIILGVSIATAWLIRKSLLGQLGGEPRYAVEITGRIAHGELSAPVD 240 Query: 241 AKPGDTTSLLFAIKKMRDSLAAIVGKVREGTHAIEQASVEIATGNMDLSSRTEQQAGALE 300 PGD +SLL+ I+ MRD LA++V +VR GTHAI AS EIA GN +LS RTEQQA LE Sbjct: 241 TAPGDRSSLLYEIRVMRDKLASLVQQVRVGTHAIADASSEIAVGNQNLSERTEQQADTLE 300 Query: 301 ETASAMEELMSTVKQNADNARQASQLAVSASDVASQGGQVVGQVVSTMEGINASSRKIVD 360 +T +AM+EL V++NADNA+QA LA SASDVASQ G VV QVV TM I+ASSRKIVD Sbjct: 301 KTVAAMDELTQAVRRNADNAQQAKHLAGSASDVASQAGTVVQQVVDTMGQIDASSRKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITDLIND 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AA+EI LI+ Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSASAAREIKSLIDS 420 Query: 421 SVGQIEQGSSLVGQAGATMENVVTSVKRVTDVVAEISHASQEQSHGIAQVNLAITHMDEA 480 SV + GS LV QAGATM++VV SV+RV+ VV EIS ASQ QS GI +VN AI +DE Sbjct: 421 SVSSVTDGSRLVEQAGATMQDVVESVQRVSAVVVEISAASQAQSDGILEVNTAIARLDEN 480 Query: 481 TQQNSALVEEAAAAANSMQTQAEQLAGLVSTFKLAHSPA 519 TQQN+ALVEEAAAA+ SM QA+ L LV FKL SPA Sbjct: 481 TQQNAALVEEAAAASQSMSQQADHLNQLVGAFKL--SPA 517 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 419 bits (1077), Expect = e-118, Method: Compositional matrix adjust. Identities = 259/522 (49%), Positives = 352/522 (67%), Gaps = 20/522 (3%) Query: 7 MKIGTKLSLGFALLLTLTIILAGISLFSINRLTG------SIKAADDVQVERLLPLYLAR 60 MK+GT+L LGFA ++ L +++ G +F+++++ G +K + V+ +L Sbjct: 5 MKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEML------ 58 Query: 61 EALDQTGLAARNAYVFRTEADAQKELAIVDEQKQIYLKALKDMEPHFV-GHKGFDKVRTG 119 E + + ++ RN + D E ++ Q Y A + ++ F D+ + Sbjct: 59 ETVGERSISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAA 118 Query: 120 LLQMAEEL-KRPRIYRES---GKMEE---FRDFLVNECSPLRRQIVLDINKVIEEADADN 172 L ++A + K ++ E+ GK E FL + P+++ +++ + D N Sbjct: 119 LPKIAAQASKAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQLN 178 Query: 173 IKAHQATVDMAAMASSLVAVLTGIVAVISALVAFVITRSLLKQLGGEPAYAADIAQQIAS 232 +A +A+ + A L+ +++ I V + L AF +TR LL++LGGEP YA IA QIA Sbjct: 179 KEAAEASAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAE 238 Query: 233 GDLTADVDAKPGDTTSLLFAIKKMRDSLAAIVGKVREGTHAIEQASVEIATGNMDLSSRT 292 GDL +D + GD SL+ A++ MRD LAAIV +VR+G+ I AS EIA GN+DLS RT Sbjct: 239 GDLAVVIDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRT 298 Query: 293 EQQAGALEETASAMEELMSTVKQNADNARQASQLAVSASDVASQGGQVVGQVVSTMEGIN 352 EQQAGALEETAS+ME+L STVKQNA+NA QA+ LA++ASDVA QGG +V QVV TM+ IN Sbjct: 299 EQQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQTMQSIN 358 Query: 353 ASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAK 412 ASS+K+ DI+SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAK Sbjct: 359 ASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAK 418 Query: 413 EITDLINDSVGQIEQGSSLVGQAGATMENVVTSVKRVTDVVAEISHASQEQSHGIAQVNL 472 EI LI DSVG++E GS LV QAG+TM ++VTS++RVTDV+ EI+HA++EQS GI QVN Sbjct: 419 EIKVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNE 478 Query: 473 AITHMDEATQQNSALVEEAAAAANSMQTQAEQLAGLVSTFKL 514 AI +D+ TQQN+ALVE+AAAAA S+Q QA L LVS F+L Sbjct: 479 AIIQIDDMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRL 520 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.127 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,164,621 Number of extensions: 39590 Number of successful extensions: 574 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 295 Number of HSP's successfully gapped: 71 Length of query: 545 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 455 Effective length of database: 1,193,720 Effective search space: 543142600 Effective search space used: 543142600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)