BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0081.p
         (356 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313015|ref|YP_003777107.1| maleylacetate reductase [Herbas...   710   0.0  
gi|300309488|ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase...   102   4e-23

>gi|300313015|ref|YP_003777107.1| maleylacetate reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/356 (100%), Positives = 356/356 (100%)

Query: 1   MQAFTYTSAAARVIFGHGSLQHLVRETELLGAQRALVLCTPGQRAEAERVAALIGARCAG 60
           MQAFTYTSAAARVIFGHGSLQHLVRETELLGAQRALVLCTPGQRAEAERVAALIGARCAG
Sbjct: 1   MQAFTYTSAAARVIFGHGSLQHLVRETELLGAQRALVLCTPGQRAEAERVAALIGARCAG 60

Query: 61  IFDQAVMHVPIETARHAREVARALGADCAIAIGGGSTMGLGKAIALESELPILAIPTTYA 120
           IFDQAVMHVPIETARHAREVARALGADCAIAIGGGSTMGLGKAIALESELPILAIPTTYA
Sbjct: 61  IFDQAVMHVPIETARHAREVARALGADCAIAIGGGSTMGLGKAIALESELPILAIPTTYA 120

Query: 121 GSEMTPIYGLTEAGRKKTGRDARVLPRTVIYDPALSLGLPLDLSVTSGINAMAHAAEGLY 180
           GSEMTPIYGLTEAGRKKTGRDARVLPRTVIYDPALSLGLPLDLSVTSGINAMAHAAEGLY
Sbjct: 121 GSEMTPIYGLTEAGRKKTGRDARVLPRTVIYDPALSLGLPLDLSVTSGINAMAHAAEGLY 180

Query: 181 APDANPIMSLLAEEGLRALAEGLPQLAARADDIDARSRCLYGAWLCGTVLGNVGMSLHHK 240
           APDANPIMSLLAEEGLRALAEGLPQLAARADDIDARSRCLYGAWLCGTVLGNVGMSLHHK
Sbjct: 181 APDANPIMSLLAEEGLRALAEGLPQLAARADDIDARSRCLYGAWLCGTVLGNVGMSLHHK 240

Query: 241 LCHTLGGSYNLPHAQTHTVILPHALAYNAAAAPQAMQRIARALGVEDAAQGVYALARALH 300
           LCHTLGGSYNLPHAQTHTVILPHALAYNAAAAPQAMQRIARALGVEDAAQGVYALARALH
Sbjct: 241 LCHTLGGSYNLPHAQTHTVILPHALAYNAAAAPQAMQRIARALGVEDAAQGVYALARALH 300

Query: 301 APLSLKELGMPYEALAQCTEIALQNAYANPRPLQREALHALLEDAWHGRPPAGGRD 356
           APLSLKELGMPYEALAQCTEIALQNAYANPRPLQREALHALLEDAWHGRPPAGGRD
Sbjct: 301 APLSLKELGMPYEALAQCTEIALQNAYANPRPLQREALHALLEDAWHGRPPAGGRD 356


>gi|300309488|ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score =  102 bits (255), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 175/370 (47%), Gaps = 43/370 (11%)

Query: 12  RVIFGHGSLQHLVRETELLGAQRALVLCTPGQRAEAERVAALIGARCAGI----FDQAVM 67
           +V F +G+L  L +E + LG ++ LV+   G R  A  +  ++G    G+    +DQ   
Sbjct: 9   QVQFDYGALALLQQECDRLGIKKPLVVTDMGIR-NAGLLDKVLGQLKEGVGAVVYDQTPP 67

Query: 68  HVPIETARHAREVARALGADCAIAIGGGSTMGLGKAIA--------------LESEL--- 110
           +      R A  + R  G D  +A+GGGS++ L K +A              +E  L   
Sbjct: 68  NPNEGAVRAAVALFRQHGCDGIVAVGGGSSIDLAKGVAVCGTHEGPLKSFALIEGGLANI 127

Query: 111 -----PILAIPTTYA-GSEM-TPIYGLTEAGRKKTGRDARVLPRTVIYDPALSLGLPLDL 163
                P++AIPTT   GSE+      + + GRK       ++P+  I DP L+LGLP  +
Sbjct: 128 TAKTAPVIAIPTTAGTGSEVGRGAILILDDGRKVGIISPYLVPKLAICDPELTLGLPPLM 187

Query: 164 SVTSGINAMAHAAEGLYAPDANPIMSLLAEEGL-RALAEGLPQLAARADDIDARSRCLYG 222
           +  +G++A+AH  E   AP  NP    +A +GL RA A  + +      D +AR   +  
Sbjct: 188 TAATGMDAIAHCLETFMAPSFNPPADGIALDGLWRAWAH-IERATREPGDREARLN-MMS 245

Query: 223 AWLCGTVLGNVGMSLHHKLCHTLGG-SYNLPHAQTHTVILPHALAYNAAAAP----QAMQ 277
           A + G +    G+   H L H+LGG +  L H   + + LP  +A+N +AA       M 
Sbjct: 246 ASMQGAMAFQKGLGCVHSLSHSLGGINPRLHHGTLNAIFLPAIIAFNESAASMVKDNKMA 305

Query: 278 RIARALGVEDAAQ---GVYALARALHAPLSLKELGMPYEALAQCTEIAL--QNAYANPRP 332
           R+A A+G+   A+    +  ++R L  P  L ELG+      Q  + AL   +   NPR 
Sbjct: 306 RMAHAMGLGSGAEIGPAIREMSRRLGLPAGLGELGVTESMFPQIIQGALADHSHKTNPRE 365

Query: 333 L-QREALHAL 341
             +++ LH L
Sbjct: 366 ASEQDYLHML 375


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,072,368
Number of extensions: 42529
Number of successful extensions: 166
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 2
Length of query: 356
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 270
Effective length of database: 1,212,660
Effective search space: 327418200
Effective search space used: 327418200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)