BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0079.p (305 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313017|ref|YP_003777109.1| LysR family transcription regul... 614 e-177 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 219 3e-58 gi|300311458|ref|YP_003775550.1| LysR family transcription regul... 196 2e-51 gi|300312334|ref|YP_003776426.1| transcription regulator protein... 186 2e-48 gi|300313922|ref|YP_003778014.1| LysR family transcription regul... 177 1e-45 >gi|300313017|ref|YP_003777109.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 614 bits (1584), Expect = e-177, Method: Compositional matrix adjust. Identities = 302/305 (99%), Positives = 304/305 (99%) Query: 1 MDRWSQFELFVQVAELGSLSRAAEALGLSNAAASRALAALEQRLGARLVERSTRRLGLSR 60 MDRWSQFELFVQVAELGSLSRAAEALGLSNAAASRALAALEQRLGARLVERSTRRLGLSR Sbjct: 1 MDRWSQFELFVQVAELGSLSRAAEALGLSNAAASRALAALEQRLGARLVERSTRRLGLSR 60 Query: 61 AGEDFYRHCKAALTQMKEAEQQVNAASAAPSGTLRITSSLSFCMKHISPLLPRFHQRYPE 120 AGEDFYRHCKAALTQMKEAEQQVNAASAAPSGTLRITSSLSFCMKHISPLLPRFHQRYPE Sbjct: 61 AGEDFYRHCKAALTQMKEAEQQVNAASAAPSGTLRITSSLSFCMKHISPLLPRFHQRYPE 120 Query: 121 VRLEVIAANRYMDLLDSDIDLAIRTREFEPDANIAVRRLATTRRILAAAPGYLAARGTPR 180 VRLEVIAANRYMDLLDSDIDLAIRTREFEPDANIAVRRLATTRRILAAAPGYLAARGTPR Sbjct: 121 VRLEVIAANRYMDLLDSDIDLAIRTREFEPDANIAVRRLATTRRILAAAPGYLAARGTPR 180 Query: 181 TLDDLAQHDLLVYSHAKEPNRLHLTERDGSQRTLEIKSLMQSNDGQIIRAAALEGLGILI 240 TLDDLAQHDLLVYSHAKEPNRLHL+ RDGSQRTLEIKSLMQSNDGQIIRAAALEGLGILI Sbjct: 181 TLDDLAQHDLLVYSHAKEPNRLHLSGRDGSQRTLEIKSLMQSNDGQIIRAAALEGLGILI 240 Query: 241 QPNYIIYDDIVAGRLVPVLDEWDLPRLSINIAYQGRKHLPARVKVFIDFLVQHFEEMDYE 300 QPNYIIYDDIVAGRLVPVLDEWDLPRLSINIAYQGRKHLPARV+VFIDFLVQHFEEMDYE Sbjct: 241 QPNYIIYDDIVAGRLVPVLDEWDLPRLSINIAYQGRKHLPARVRVFIDFLVQHFEEMDYE 300 Query: 301 RKWTR 305 RKWTR Sbjct: 301 RKWTR 305 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 219 bits (557), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 111/300 (37%), Positives = 183/300 (61%), Gaps = 2/300 (0%) Query: 1 MDRWSQFELFVQVAELGSLSRAAEALGLSNAAASRALAALEQRLGARLVERSTRRLGLSR 60 M++ + E F+ VA+LGS +AAEALG+S AA SR + LE RLG+RL++R+TRRL L+ Sbjct: 1 MNKLREIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTE 60 Query: 61 AGEDFYRHCKAALTQMKEAEQQVNAASAAPSGTLRITSSLSFCMKHISPLLPRFHQRYPE 120 AG + CK + ++EA+ +++ SA P+G LRI + L+F + H++PL P F +R+PE Sbjct: 61 AGALYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPE 120 Query: 121 VRLEVIAANRYMDLLDSDIDLAIRTREFEPDANIAVRRLATTRRILAAAPGYLAARGTPR 180 + L++ ++R +D++D D+AIR D+ + R+L +T + A+P YL A GTP Sbjct: 121 ISLDITLSDRIVDIIDEGYDMAIRIARLS-DSTLVHRKLTSTSLHVCASPAYLDAHGTPA 179 Query: 181 TLDDLAQHDLLVYSHAKEPNRLHLTERDGSQRTLEIKSLMQSNDGQIIRAAALEGLGILI 240 +LAQH + YS+ + + +G ++ + S + N+G AAL G+GI Sbjct: 180 HPHELAQHQTISYSYNQSKDEWQFNGPEGPV-SVRVSSRLHVNNGDSCVQAALGGIGITR 238 Query: 241 QPNYIIYDDIVAGRLVPVLDEWDLPRLSINIAYQGRKHLPARVKVFIDFLVQHFEEMDYE 300 QP ++I + +G+LV +L ++ P L I Y R HLPA+++ +DFL + F ++ + Sbjct: 239 QPTFMIDQYLRSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFLTEAFAQVHWN 298 >gi|300311458|ref|YP_003775550.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 196 bits (497), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 107/294 (36%), Positives = 174/294 (59%), Gaps = 1/294 (0%) Query: 1 MDRWSQFELFVQVAELGSLSRAAEALGLSNAAASRALAALEQRLGARLVERSTRRLGLSR 60 MDR +F +V E GS RAAE L +SNA A+R +A LE LG RL+ RSTRRL L+ Sbjct: 1 MDRLQSMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTE 60 Query: 61 AGEDFYRHCKAALTQMKEAEQQVNAASAAPSGTLRITSSLSFCMKHISPLLPRFHQRYPE 120 AG+ + + L ++ +AE V+ + P+GTL I + F + +L + Q YPE Sbjct: 61 AGQAYLERVRMILAEVDDAEALVSLETKRPAGTLAIYCNAGFGQSQLGEMLSAYSQAYPE 120 Query: 121 VRLEVIAANRYMDLLDSDIDLAIRTREFEPDANIAVRRLATTRRILAAAPGYLAARGTPR 180 V L++ + R +DL++ ID+ + + DA++ VR+L R IL +P Y+A +G P Sbjct: 121 VALDISLSERSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVARVILCTSPAYIARQGAPE 180 Query: 181 TLDDLAQHDLLVYSHAKEPNRLHLTERDGSQRTLEIKSLMQSNDGQIIRAAALEGLGILI 240 +DL++H+ L +SH + H+ +G + I S + SN G ++R AL G+GI++ Sbjct: 181 QPEDLSRHNCLNFSHEYLRHHWHVNT-NGGVLDVPIVSKVVSNSGVLLRDLALAGMGIVL 239 Query: 241 QPNYIIYDDIVAGRLVPVLDEWDLPRLSINIAYQGRKHLPARVKVFIDFLVQHF 294 +P+Y + DD+ +GRLV VL +D+ ++ +++ Y R+ L A+V+ F +F+ F Sbjct: 240 RPSYSLGDDLRSGRLVQVLPGFDMGQVIMSMVYPSRRLLSAKVRSFAEFISARF 293 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 186 bits (472), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 108/302 (35%), Positives = 170/302 (56%), Gaps = 2/302 (0%) Query: 1 MDRWSQFELFVQVAELGSLSRAAEALGLSNAAASRALAALEQRLGARLVERSTRRLGLSR 60 MD++ Q F +VA GSLS AA A G++ A R L ALE+RLG +L++R+TR++ L+ Sbjct: 1 MDQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60 Query: 61 AGEDFYRHCKAALTQMKEAEQQVNAASAAPSGTLRITSSLSFCMKHISPLLPRFHQRYPE 120 G F C+ L +++AE V+ SA SG L I++ F +H++PLLP F + + Sbjct: 61 EGAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLLPSFLAEHRD 120 Query: 121 VRLEVIAANRYMDLLDSDIDLAIRTREFEPDANIAVRRLATTRRILAAAPGYLAARGTPR 180 V L + +R D++ ID+AIR D+N+ +LA R++ AAP YL GTP+ Sbjct: 121 VTLTLNLNDRIADVIGEGIDVAIRIATLT-DSNLVSVKLAENHRVIVAAPAYLRRHGTPQ 179 Query: 181 TLDDLAQHDLLVYSHAKEPNRLHLTERDGSQRTLEIKSLMQSNDGQIIRAAALEGLGILI 240 + D+L +H+ L S ++ R + G ++ M NDG+++ AL G G+ Sbjct: 180 SPDELMRHNCLAMS-SEGSQRGWTLRQSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAW 238 Query: 241 QPNYIIYDDIVAGRLVPVLDEWDLPRLSINIAYQGRKHLPARVKVFIDFLVQHFEEMDYE 300 + + + I AG LV VLD++ P SI + R+HLP R++ F+DFL + + DY Sbjct: 239 RSMWEVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFLRHAYAQPDYW 298 Query: 301 RK 302 +K Sbjct: 299 KK 300 >gi|300313922|ref|YP_003778014.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 177 bits (449), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 106/305 (34%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MDRWSQFELFVQVAELGSLSRAAEALGLSNAAASRALAALEQRLGARLVERSTRRLGLSR 60 MDR ++FV V + GSLS AAE L LS SR +A LE +GARL+ R+TRRL L+ Sbjct: 1 MDRLMAMQVFVTVVDSGSLSAAAEQLDLSRPVVSRYVAELEDWVGARLLHRTTRRLSLTP 60 Query: 61 AGEDFYRHCKAALTQMKEAEQQVNAASAAPSGTLRITSSLSFCMKHISPLLPRFHQRYPE 120 AG + C+ L ++ ++A P G LRIT+S SF + + + +RYP Sbjct: 61 AGNELLPRCRQMLEYSEDMRHALDAPDETPRGLLRITASTSFAQTQLIQAVVEYGRRYPG 120 Query: 121 VRLEVIAANRYMDLLDSDIDLAIR-TREFEPDANIAVRRLATTRRILAAAPGYLAARGTP 179 V ++++A +R ++L++ IDLAIR T EP N+ R L R I+ A P YLA G P Sbjct: 121 VAVDLLALDRTVNLVEERIDLAIRMTNRLEP--NLIARPLGVCRSIICATPDYLARHGLP 178 Query: 180 RTLDDLAQHDLLVYSHAK------EPNRLHLTERDGSQ----RTLEIKSLMQSNDGQIIR 229 R ++DLA H+ L +S+ +P + G+ +++ + + +N+ ++ Sbjct: 179 RKVEDLALHNCLTHSYVGRSLWQFDPKKKKARSGRGASAAKPQSVAVGGSISANEVTVLL 238 Query: 230 AAALEGLGILIQPNYIIYDDIVAGRLVPVLDEWDLPRLSINIAYQGRKHLPARVKVFIDF 289 A L G+GI P Y + + +G+LV +L +++ +L + Y RKH+PA ++ +DF Sbjct: 239 QAVLAGVGIGHMPAYTVAPLVASGQLVQLLPDYEPLQLGMYGVYASRKHMPATLRTMLDF 298 Query: 290 LVQHF 294 L Q F Sbjct: 299 LAQRF 303 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 826,330 Number of extensions: 31260 Number of successful extensions: 258 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 201 Number of HSP's successfully gapped: 69 Length of query: 305 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 220 Effective length of database: 1,217,395 Effective search space: 267826900 Effective search space used: 267826900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)