BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0077.p
         (415 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313019|ref|YP_003777111.1| sodium:galactoside symporter pr...   731   0.0  

>gi|300313019|ref|YP_003777111.1| sodium:galactoside symporter
           protein [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/415 (99%), Positives = 414/415 (99%), Gaps = 1/415 (0%)

Query: 1   LSTAARRGQDAAYGLLGAPLAMAALPLFVQIPAYYASHVGLALAPLGWVLFGARLLDMLQ 60
           +STAARRGQDAAYGLLGAPLAMAALPLFVQIPAYYASHVGLALAPLGWVLFGARLLDMLQ
Sbjct: 1   MSTAARRGQDAAYGLLGAPLAMAALPLFVQIPAYYASHVGLALAPLGWVLFGARLLDMLQ 60

Query: 61  DPVFGHLLDRSAQRQKRWMAMAGAVLAVAFVCLWKPPHDPQAAMLWLVAMLVLAYGAHSM 120
           DPVFGHLLDRSAQRQKRWMAMAGAVLAVAFVCLWKPPHDPQAAMLWLVAMLVLAYGAHSM
Sbjct: 61  DPVFGHLLDRSAQRQKRWMAMAGAVLAVAFVCLWKPPHDPQAAMLWLVAMLVLAYGAHSM 120

Query: 121 LSIAYLSWASRLPEKGLRAVAWREAAGLAGVIVASVIPAAILAAEASQIDARITFYCAGF 180
           LSIAYLSWASRLPEKGLRAVAWREAAGLAGVIVASVIPAAILAAEASQIDARITFYCAGF
Sbjct: 121 LSIAYLSWASRLPEKGLRAVAWREAAGLAGVIVASVIPAAILAAEASQIDARITFYCAGF 180

Query: 181 AALLGLALLVLLRQNPPPPPQADGHHWKSALRGLWETPAFRTLLPPYLLNALSAAIAATL 240
           AALLGLALLVLLRQNPPPP QADGHHWKSALRGLWETPAFRTLLPPYLLNALSAAIAATL
Sbjct: 181 AALLGLALLVLLRQNPPPP-QADGHHWKSALRGLWETPAFRTLLPPYLLNALSAAIAATL 239

Query: 241 ALFFIEDQLQQGRLAGLFLAAYFGAAALGLPLWGALSRRVGAVACWRYAMLLSVAGFIGA 300
           ALFFIEDQLQQGRLAGLFLAAYFGAAALGLPLWGALSRRVGAVACWRYAMLLSVAGFIGA
Sbjct: 240 ALFFIEDQLQQGRLAGLFLAAYFGAAALGLPLWGALSRRVGAVACWRYAMLLSVAGFIGA 299

Query: 301 ALLGPGDRLAFLAVCLATGAALGADLLLPPVLLARSVQQAQAVGVAFGILTMLGKLALAL 360
           ALLGPGDRLAFLAVCLATGAALGADLLLPPVLLARSV+QAQAVGVAFGILTMLGKLALAL
Sbjct: 300 ALLGPGDRLAFLAVCLATGAALGADLLLPPVLLARSVRQAQAVGVAFGILTMLGKLALAL 359

Query: 361 SGIALPLLAALDYRPGQGPSVSLPLVYALLPCLLKLLAWQVLGRYGRRFPDSGQA 415
           SGIALPLLAALDYRPGQGPSVSLPLVYALLPCLLKLLAWQVLGRYGRRFPDSGQA
Sbjct: 360 SGIALPLLAALDYRPGQGPSVSLPLVYALLPCLLKLLAWQVLGRYGRRFPDSGQA 414


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,058,218
Number of extensions: 34978
Number of successful extensions: 284
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 327
Effective length of database: 1,203,190
Effective search space: 393443130
Effective search space used: 393443130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)