BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0076.p
         (519 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313020|ref|YP_003777112.1| deoxyribodipyrimidine photolyas...  1057   0.0  

>gi|300313020|ref|YP_003777112.1| deoxyribodipyrimidine photolyase
           [Herbaspirillum seropedicae SmR1]
          Length = 519

 Score = 1057 bits (2733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/519 (98%), Positives = 515/519 (99%)

Query: 1   MSKAPAAPPRAATLRLILGDQLNSRHSWFDQCDDQVVYVLMEVRSETDYVLHHAQKVLAL 60
           MSK P+APPRAATLRLILGDQLN RHSWFDQCDDQVVY+LMEVRSETDYVLHHAQKVLAL
Sbjct: 1   MSKDPSAPPRAATLRLILGDQLNPRHSWFDQCDDQVVYLLMEVRSETDYVLHHAQKVLAL 60

Query: 61  FAAMRDFAARLKAGGHRVRYIRLDDPSNRQSLVDNLSALARHYQASQVQWQAPDEWRVDE 120
           FAAMRDFAARLKAGGHRVRYIRLDDPSNRQSLVDNLSALARHYQASQVQWQAPDEWRVDE
Sbjct: 61  FAAMRDFAARLKAGGHRVRYIRLDDPSNRQSLVDNLSALARHYQASQVQWQAPDEWRVDE 120

Query: 121 ALRQWAQAQPLQTSMADSEHFLTDRHELPRLFSGRKQWLMEHFYRQMRRRFELLLEADGS 180
           ALRQWAQAQPLQTSMADSEHFLTDRHELPRLFSGRKQWLMEHFYRQMRRRFELLLEADGS
Sbjct: 121 ALRQWAQAQPLQTSMADSEHFLTDRHELPRLFSGRKQWLMEHFYRQMRRRFELLLEADGS 180

Query: 181 PTGGQWNFDHDNRKRWPGTPAEPADWRQPHDHSALWEMLQACAVPTFGDPQASQLRWPLN 240
           PTGGQWNFDHDNRKRWPGTPAEPADWRQPHDHSALWEMLQACAVPTFGDPQASQLRWPLN
Sbjct: 181 PTGGQWNFDHDNRKRWPGTPAEPADWRQPHDHSALWEMLQACAVPTFGDPQASQLRWPLN 240

Query: 241 REEALAHLEHFITQALPCFGDFEDAMSSRAQRLFHSLLSFALNVKMLHPLEVVRRAEEAY 300
           REEALAHLEHFIT ALPCFGDFEDAMSSRAQRLFHSLLSFALNVKMLHPLEVVRRAEEAY
Sbjct: 241 REEALAHLEHFITHALPCFGDFEDAMSSRAQRLFHSLLSFALNVKMLHPLEVVRRAEEAY 300

Query: 301 REGQAPLAAVEGFVRQIIGWREYVRGIYWSQMPGYEDRNVLDHGLPLPAWFWTGQTRMRC 360
           REGQAPLAAVEGFVRQIIGWREYVRGIYWSQMPGYEDRNVLDHGLPLPAWFWTGQTRMRC
Sbjct: 301 REGQAPLAAVEGFVRQIIGWREYVRGIYWSQMPGYEDRNVLDHGLPLPAWFWTGQTRMRC 360

Query: 361 LQQAIGQSLQSAHAHHIQRLMVIGNFALLAGLDPKALHQWYLGVYIDAFEWVELPNTLGM 420
           LQQAIGQSLQSAHAHHIQRLMVIGNFALLAGLDPKALHQWYLGVYIDAFEWVELPNTLGM
Sbjct: 361 LQQAIGQSLQSAHAHHIQRLMVIGNFALLAGLDPKALHQWYLGVYIDAFEWVELPNTLGM 420

Query: 421 SQWADGGIIATKPYVSSAAYIGRMSDYCQGCAYDRRQRHSEDACPYNALYWDFFLRHQER 480
           SQWADGGIIATKPYVSSAAYIGRMSDYCQGCAYD RQRHSEDACPYNALYWDFFLRHQER
Sbjct: 421 SQWADGGIIATKPYVSSAAYIGRMSDYCQGCAYDPRQRHSEDACPYNALYWDFFLRHQER 480

Query: 481 FGKNARMGMAYQQLRKMDTQELARLRERAAHLRERLDQL 519
           FGKNARMGMAYQQLRKMDTQELARLRERAAHLRERLDQL
Sbjct: 481 FGKNARMGMAYQQLRKMDTQELARLRERAAHLRERLDQL 519


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.135    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,693,738
Number of extensions: 73916
Number of successful extensions: 274
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 430
Effective length of database: 1,198,455
Effective search space: 515335650
Effective search space used: 515335650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 133 (55.8 bits)