BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0073.p
         (124 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311151|ref|YP_003775243.1| histidine-containing phosphotra...    75   1e-15

>gi|300311151|ref|YP_003775243.1| histidine-containing
           phosphotransfer (HPt) domain-containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 122

 Score = 75.5 bits (184), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 66/120 (55%), Gaps = 1/120 (0%)

Query: 6   DPHQYRHIDPSALLQAVGGDARTVASLARTFADSAPEIFARLAQAVGEGNAEAARHESHA 65
           + H Y+HI+P  LL+A+GGDA     +  TFA SAP  FARL  A+   +A   + E+H+
Sbjct: 2   NDHHYQHINPEPLLEAMGGDATACRHMFGTFAKSAPANFARLEAAILADDAAQVKREAHS 61

Query: 66  LKGMSALFNARALAEQLQQTEAAARAG-SLPAPEQWTQLQASFEQALEEIRRYAQSAGPA 124
           LK M+AL  A  L E L+  E  +RA  +  A  +  +LQ+ F     E++ Y    G A
Sbjct: 62  LKSMTALVGAGVLTELLKSIEVQSRAEPAQSAQPRLAELQSLFAATAAEVQHYVDQVGVA 121


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.124    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 361,666
Number of extensions: 11156
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 50
Effective length of database: 1,269,480
Effective search space: 63474000
Effective search space used: 63474000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 125 (52.8 bits)