BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0071.p (571 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 1088 0.0 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 570 e-164 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 511 e-146 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 496 e-141 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 486 e-138 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 1088 bits (2813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 557/571 (97%), Positives = 566/571 (99%) Query: 1 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLQLAAVNKSSTDIARNWLPSIDALSKIS 60 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSL+LAAVNKSSTDIARNWLPSIDALSK+S Sbjct: 1 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSIDALSKMS 60 Query: 61 LALARSRSFDMQQLLAADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIE 120 LALARSRSFDMQQLL ADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIE Sbjct: 61 LALARSRSFDMQQLLTADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIE 120 Query: 121 RNIALYKDAHERMSALFEQDQKQAAHALMNSASTPVYRKLQEQIGELSEVNSKGAALSDA 180 RNIALYK+AHERMSALFEQDQKQAAHALMNS STPVYRKLQEQIGELSEVNSKGAALSDA Sbjct: 121 RNIALYKEAHERMSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGELSEVNSKGAALSDA 180 Query: 181 EADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLTNAVDIARQVAAGDLTANIPT 240 +ADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPL NAVDIARQVAAGDLTA+IPT Sbjct: 181 DADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADIPT 240 Query: 241 AHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALE 300 AHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALE Sbjct: 241 AHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALE 300 Query: 301 ETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVD 360 ETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVD Sbjct: 301 ETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVD 360 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDD 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDD 420 Query: 421 SVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDEN 480 SVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDEN Sbjct: 421 SVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDEN 480 Query: 481 TQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLDAQHVPVVANRAAATAQPERNITPAR 540 TQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLDAQHVPVV +RAAATAQPER+ITPAR Sbjct: 481 TQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLDAQHVPVVVSRAAATAQPERDITPAR 540 Query: 541 PALAQSRTKAIARPAHSNTSASAEQGDWEQF 571 PALAQSR+K +ARPAHSNTSASAEQGDWEQF Sbjct: 541 PALAQSRSKVMARPAHSNTSASAEQGDWEQF 571 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 570 bits (1470), Expect = e-164, Method: Compositional matrix adjust. Identities = 332/580 (57%), Positives = 417/580 (71%), Gaps = 10/580 (1%) Query: 1 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLQLAAVNKSSTDIARNWLPSIDALSKIS 60 M WFY+L+I+ KL FLVV+ + LG FS QL VN +ST+I+ NWLPSI L+++ Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQ 60 Query: 61 LALARSRSFDMQQLLAADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIE 120 LA++R RSF++Q +LA D +E + QM L A Y +SEP EK +YPE+E Sbjct: 61 LAMSRLRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEVE 120 Query: 121 RNIALYKDAHERMSALFEQDQKQAAHALMNSASTPVYRKLQEQIGELSEVNSKGAALSDA 180 + IA + H+++ AL Q + + A L ST YR +QI +L+ VN KGA +S+ Sbjct: 121 KLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISNK 180 Query: 181 EADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLTNAVDIARQVAAGDLTANIPT 240 +AD IY QA + I+ V C+ LAM L+ W++RL+ARPL AV +A++VA GDLT I Sbjct: 181 QADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEP 240 Query: 241 AHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALE 300 A +DETGQLL AL+ MN +L+ IV +VR GT TITTAS EIA+GN+DLSSRTE+QA +LE Sbjct: 241 AGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLE 300 Query: 301 ETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVD 360 ETASAMEELTSTV+QN+DNARQANQLAV+ASEVA GG VV +VV TM +IN SSRKI D Sbjct: 301 ETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIAD 360 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDD 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AA EIK LI+ Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEG 420 Query: 421 SVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDEN 480 SVA+VD GSKLV+ AG TM+EVV SV+RV+DIV EI++A EQ++GIEQ+N A+ QMDE Sbjct: 421 SVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEV 480 Query: 481 TQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLDAQ------HVPVVANRAAATAQPER 534 TQQNAALVE+AAAAA++LQEQA L++TV F+L+ Q PV A A TA R Sbjct: 481 TQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLEQQPDEPASRPPVRAASVARTAAV-R 539 Query: 535 NITPARPALAQSRTKAIARPAHSNT---SASAEQGDWEQF 571 + RPA + + A A+PA + A+ + G WEQF Sbjct: 540 HAPATRPAATLAASAAPAKPASGSRLPGGAAEDGGSWEQF 579 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 511 bits (1315), Expect = e-146, Method: Compositional matrix adjust. Identities = 290/514 (56%), Positives = 374/514 (72%) Query: 1 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLQLAAVNKSSTDIARNWLPSIDALSKIS 60 M WF NLKIA KL +F V+V + LG F+ +L AVN++STD+A NWLP+I A I Sbjct: 1 MTWFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 Query: 61 LALARSRSFDMQQLLAADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIE 120 +L R R ++Q + AA E + + + ++ L K+ A Y +SE EK LY + Sbjct: 61 ASLPRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKFS 120 Query: 121 RNIALYKDAHERMSALFEQDQKQAAHALMNSASTPVYRKLQEQIGELSEVNSKGAALSDA 180 ++ A Y + + ++ + + +++ A AL S +R + E + E+ +VN G+ SD Sbjct: 121 KSFATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVNDAGSKRSDD 180 Query: 181 EADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLTNAVDIARQVAAGDLTANIPT 240 A+ +Y A + I+ L+ VV+A+ L+ +AR V+RPL AV +A +VA GDLT +I Sbjct: 181 MAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIRA 240 Query: 241 AHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALE 300 DETG L+ +LR MN +L IV EVR GTDTITTAS EIATGN+DLSSRTE+QAG+LE Sbjct: 241 TSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLE 300 Query: 301 ETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVD 360 ETASAMEELT+TV+QN+DNARQANQLA +AS++A GG VVG+VV TM I +SS +I D Sbjct: 301 ETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIAD 360 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AA EIK LIDD Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDD 420 Query: 421 SVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDEN 480 SV KV GS+LV+ AG TM+EVVASV+RV+D+VAEI+AA EQ+ GIE+IN A+ QMDE Sbjct: 421 SVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEV 480 Query: 481 TQQNAALVEQAAAAAKALQEQAGRLSETVSVFRL 514 TQQNAALVE+AAAAA++LQ+QA RLS+ VSVF+L Sbjct: 481 TQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKL 514 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 496 bits (1277), Expect = e-141, Method: Compositional matrix adjust. Identities = 282/515 (54%), Positives = 363/515 (70%) Query: 1 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLQLAAVNKSSTDIARNWLPSIDALSKIS 60 M WFYNL IA KL +F VV+ + G F+ +L VNK+S +I W+P++DA ++ Sbjct: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ 60 Query: 61 LALARSRSFDMQQLLAADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIE 120 +L R +++ + A QE A+ + ++ L ++ A + + +SEP+EKE Y + Sbjct: 61 GSLPPLRLNELELVTAVTPQERAAANKAIKDRLDALTRQRAIFEQRMSEPQEKEQYAQFL 120 Query: 121 RNIALYKDAHERMSALFEQDQKQAAHALMNSASTPVYRKLQEQIGELSEVNSKGAALSDA 180 +N+ Y E+++ + Q AL N S +YR + + + ++N+ G+A +D Sbjct: 121 KNLTAYVKVDEQLAEMAANQQYDETRALFNGDSAKLYRSMVGNLDAIVKINTSGSAQADE 180 Query: 181 EADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLTNAVDIARQVAAGDLTANIPT 240 EA ++ A I+ L+ V++A L++ +A V+RPL AV IA++VA GDLT I Sbjct: 181 EASTVFRGAQRWIVGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTLRIRP 240 Query: 241 AHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALE 300 A RDETG L+EALR MN +L +IV EVRQGTDTITTAS EIA GN+DLS+RTEQQAG+LE Sbjct: 241 AGRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSLE 300 Query: 301 ETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVD 360 ETASAMEELTSTV QN+DNARQANQLA AS++A GG VVG+VV TM I +SSR+I D Sbjct: 301 ETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIAD 360 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AA EIK LIDD Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 Query: 421 SVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDEN 480 SV KV GS LV+ AG TM EVVASV+RV+D+VAEI+AA EQ+ GI ++N A+ QMDE Sbjct: 421 SVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 Query: 481 TQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLD 515 TQQNAALVEQAAAAA +L+ QA L+ V F+LD Sbjct: 481 TQQNAALVEQAAAAADSLKGQASNLAAVVGKFKLD 515 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 486 bits (1250), Expect = e-138, Method: Compositional matrix adjust. Identities = 299/582 (51%), Positives = 393/582 (67%), Gaps = 26/582 (4%) Query: 1 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLQLAAVNKSSTDIARNWLPSIDALSKIS 60 MNWFYN +IA KL AF VL+ GLG FS +QL VN+++T++A NWLPSI +L+ + Sbjct: 1 MNWFYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMK 60 Query: 61 LALARSRSFDMQ-QLLAADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYP-- 117 +AL+R R+ Q L D+++ A +K + L + +Y +SEP EK L+P Sbjct: 61 VALSRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGV 120 Query: 118 --EIERNIALYKD--AHERMSALFEQDQKQAAHALMNSASTPVYRKLQEQIGELSEVNSK 173 I++ IAL+ D A R L E + A N Y L + +L++VN Sbjct: 121 NARIDKFIALHGDTLAAVRAGKLDEAKRLLLGPAFEN------YLSLLNDLDKLAQVNLD 174 Query: 174 GAALSDAEADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLTNAVDIARQVAAGD 233 G+ S A+ Y QA + ++A++ ++ +AL+ +IAR++A PL +A + A +AAGD Sbjct: 175 GSVQSTRSAETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGD 234 Query: 234 LTANIPTAHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTE 293 LTA+I DETGQL AL MN +L IV +VR GTD I TAS +I++GN+DLSSRTE Sbjct: 235 LTADITARSDDETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTE 294 Query: 294 QQAGALEETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAIND 353 +QA +LEETASAMEELTSTVRQN++NARQANQLA++AS +A+ GG VV +V+ TM +I+ Sbjct: 295 EQASSLEETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDA 354 Query: 354 SSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHE 413 SS+KIVDII VID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA AA E Sbjct: 355 SSKKIVDIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKE 414 Query: 414 IKALIDDSVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNA 473 IK LID+SV +V GS LV +AG T++EVV+SV+RV+D+++EI+AA EQTQGIEQ+N A Sbjct: 415 IKTLIDNSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQA 474 Query: 474 VVQMDENTQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLDAQHVPVVANR----AAAT 529 + QMDE TQQNAALVE+AA+A+++L QA RLSE V VFRL P A + A Sbjct: 475 ITQMDEVTQQNAALVEEAASASQSLSHQAQRLSELVGVFRL-----PGAARQQVPEVAVV 529 Query: 530 AQPERNITPARPALAQSRTKAIARPAHSNTSASAEQGDWEQF 571 A TP RPA+A + + A PA + EQ WE F Sbjct: 530 ATAAPAYTPRRPAVAGATSTAT--PALAVAQGPDEQ--WETF 567 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.124 0.327 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,295,926 Number of extensions: 45498 Number of successful extensions: 575 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 331 Number of HSP's successfully gapped: 72 Length of query: 571 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 481 Effective length of database: 1,193,720 Effective search space: 574179320 Effective search space used: 574179320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)