BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0070.p (320 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313025|ref|YP_003777117.1| chemotaxis signal transduction ... 655 0.0 gi|300311277|ref|YP_003775369.1| chemotaxis signal transduction ... 402 e-113 gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbas... 57 2e-09 gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbas... 56 4e-09 >gi|300313025|ref|YP_003777117.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 320 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/320 (99%), Positives = 320/320 (100%) Query: 1 MDSFQKEIDERTNLTSTNKFELLLFRLGTPDGSTDKPGELYGINVFKIREIVPMMDITAA 60 MDSFQKEIDERTNLTSTNKFELLLFRLGTPDGSTDKPGELYGINVFKIREIVPMMDITAA Sbjct: 1 MDSFQKEIDERTNLTSTNKFELLLFRLGTPDGSTDKPGELYGINVFKIREIVPMMDITAA 60 Query: 61 AGMRSPMMGMVNIRGQVMSVVDLPAVAGCKAGHGNNILLITEFARHTQAFAVESVEEIVR 120 AGMRSPMMGMVNIRGQVMSVVDLPAVAGCKAGHGNNILLITEFARHTQAFAVESVEEIVR Sbjct: 61 AGMRSPMMGMVNIRGQVMSVVDLPAVAGCKAGHGNNILLITEFARHTQAFAVESVEEIVR 120 Query: 121 LDWSQVLPADSHSPGSLVTSIARLDSEVDGGRLVQVLDVEHILNLVSPVKEQMQPAPPGA 180 LDWSQVLPADSHSPGSLVTSIARLDSEVDGGRLVQVLDVEHILNLVSPVKEQMQPAPPGA Sbjct: 121 LDWSQVLPADSHSPGSLVTSIARLDSEVDGGRLVQVLDVEHILNLVSPVKEQMQPAPPGA 180 Query: 181 AELKLKPGSVVLAADDSRMARALIEQCLKDLNLPFIMETDGLQAWKKLQQLSQAAAQEGK 240 AELKLKPG+VVLAADDSRMARALIEQCLKDLNLPFIMETDGLQAWKKLQQLSQAAAQEGK Sbjct: 181 AELKLKPGAVVLAADDSRMARALIEQCLKDLNLPFIMETDGLQAWKKLQQLSQAAAQEGK 240 Query: 241 PLTDKVAMVLTDLEMPEMDGFTLTRKIKASDQYKQLPVVIHSSLTGSANEDHVRSVGANG 300 PLTDKVAMVLTDLEMPEMDGFTLTRKIKASDQYKQLPVVIHSSLTGSANEDHVRSVGANG Sbjct: 241 PLTDKVAMVLTDLEMPEMDGFTLTRKIKASDQYKQLPVVIHSSLTGSANEDHVRSVGANG 300 Query: 301 YVAKFSPPELAAMLRQVLPP 320 YVAKFSPPELAAMLRQVLPP Sbjct: 301 YVAKFSPPELAAMLRQVLPP 320 >gi|300311277|ref|YP_003775369.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 402 bits (1034), Expect = e-113, Method: Compositional matrix adjust. Identities = 199/320 (62%), Positives = 252/320 (78%), Gaps = 5/320 (1%) Query: 1 MDSFQKEIDERTNLTSTNKFELLLFRLGT-PDGSTDKPGELYGINVFKIREIVPMMDITA 59 MD+FQKEIDERTNLT++NKFELLLFRLGT P G + EL+GINVFKIREIVPM +T Sbjct: 1 MDNFQKEIDERTNLTASNKFELLLFRLGTDPHG---ERSELFGINVFKIREIVPMPPVTK 57 Query: 60 AAGMRSPMMGMVNIRGQVMSVVDLPAVAGCKAGHGNNILLITEFARHTQAFAVESVEEIV 119 AAG +SPM+GMVNIRGQ++SV+DLPAV GC G NILL+TE+AR TQAFAVESV+EIV Sbjct: 58 AAGTQSPMLGMVNIRGQIISVIDLPAVVGCVPKTGLNILLVTEYARSTQAFAVESVDEIV 117 Query: 120 RLDWSQVLPADSHSPGSLVTSIARLDSEVDGGRLVQVLDVEHILNLVSPVKEQMQ-PAPP 178 RL+WSQVL A++ S G+ VTSIARLD++ D RL QVLDVE IL+ + P ++ + Sbjct: 118 RLEWSQVLSAETSSGGAFVTSIARLDADKDTSRLAQVLDVEQILHEIMPTDRDLKMESLE 177 Query: 179 GAAELKLKPGSVVLAADDSRMARALIEQCLKDLNLPFIMETDGLQAWKKLQQLSQAAAQE 238 +A ++PG+V +AADDS++AR+LIEQ L+ + +P+ M G +AW+K+Q+L++ A E Sbjct: 178 KSASHGIRPGTVAIAADDSKVARSLIEQGLRAMEIPYEMHVTGKEAWEKIQKLAREARAE 237 Query: 239 GKPLTDKVAMVLTDLEMPEMDGFTLTRKIKASDQYKQLPVVIHSSLTGSANEDHVRSVGA 298 G+P++DK++ VLTDLEMPEMDGFTLTR IK D K +PV+IHSSL+GSANEDHVRSVG Sbjct: 238 GRPISDKISFVLTDLEMPEMDGFTLTRNIKREDYLKSIPVIIHSSLSGSANEDHVRSVGG 297 Query: 299 NGYVAKFSPPELAAMLRQVL 318 + YVAKF ELAA + VL Sbjct: 298 DAYVAKFEANELAATIYGVL 317 >gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 131 Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 17/133 (12%) Query: 187 PGSVVLAADDSRMARALIEQCLKDLNLPFIMET-DGLQAWKKLQQLSQAAAQEGKPLTDK 245 P + L DD R ++ LK+L + E DG+QA +KL+ +D+ Sbjct: 4 PNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLR-------------SDQ 50 Query: 246 VAMVLTDLEMPEMDGFTLTRKIKASDQYKQLPVVIHSSLTGSANEDHVRSVGANGYVAKF 305 V++D MP MDG T+ ++I+ +LPV++ ++ N GANGYV K Sbjct: 51 FDFVVSDWNMPNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVK- 109 Query: 306 SPPELAAMLRQVL 318 P AA L + L Sbjct: 110 --PFTAATLDEKL 120 >gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbaspirillum seropedicae SmR1] Length = 121 Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 14/129 (10%) Query: 191 VLAADDSRMARALIEQCLKDLNLPFIMETDGLQAWKKLQQLSQAAAQEGKPLTDKVAMVL 250 +LA DDS R ++ LK DG+ A L +A +Q +VL Sbjct: 5 ILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDA------LEKAKSQT-------FDLVL 51 Query: 251 TDLEMPEMDGFTLTRKIKASDQYKQLPVVIHSSLTGSANEDHVRSVGANGYVAK-FSPPE 309 TD MP MDG TL R ++ Y ++P+++ ++ + ++ GANG++ K F P Sbjct: 52 TDQNMPRMDGLTLIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQR 111 Query: 310 LAAMLRQVL 318 L ++R+V+ Sbjct: 112 LTEVVRKVI 120 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 925,695 Number of extensions: 35956 Number of successful extensions: 195 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 197 Number of HSP's successfully gapped: 4 Length of query: 320 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 235 Effective length of database: 1,217,395 Effective search space: 286087825 Effective search space used: 286087825 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)