BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0063.p (195 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313031|ref|YP_003777123.1| two component response regulato... 391 e-110 gi|300313791|ref|YP_003777883.1| response regulator protein [Her... 99 2e-22 gi|300310669|ref|YP_003774761.1| two component response regulato... 75 3e-15 gi|300310176|ref|YP_003774268.1| C4-dicarboxylate transport tran... 61 7e-11 >gi|300313031|ref|YP_003777123.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 195 Score = 391 bits (1004), Expect = e-110, Method: Compositional matrix adjust. Identities = 194/195 (99%), Positives = 195/195 (100%) Query: 1 MTNAHLAHIVGGDDSLGGPLGRLLEEAGFHVAHHRSADQFLEHATATGPGGLVLAVNMRN 60 MTNAHLAHIVGGDDSLGGPLGRLLEEAGFHVAHHRSADQFLEHATATGPGGLVLAVNMRN Sbjct: 1 MTNAHLAHIVGGDDSLGGPLGRLLEEAGFHVAHHRSADQFLEHATATGPGGLVLAVNMRN 60 Query: 61 MDAPQLRSLLDEKKEGIPLIVITGSQPGAAPLGQSSAQQEPEVAQQLVAAFREALMPYDE 120 MDAPQLRSLLDEKKEGIPLIVITG+QPGAAPLGQSSAQQEPEVAQQLVAAFREALMPYDE Sbjct: 61 MDAPQLRSLLDEKKEGIPLIVITGNQPGAAPLGQSSAQQEPEVAQQLVAAFREALMPYDE 120 Query: 121 SAPHQQQRRIHQARLATLTRREREVLMLLVKGRLNKQIAAELGTSERTVKAHRQQVMRKM 180 SAPHQQQRRIHQARLATLTRREREVLMLLVKGRLNKQIAAELGTSERTVKAHRQQVMRKM Sbjct: 121 SAPHQQQRRIHQARLATLTRREREVLMLLVKGRLNKQIAAELGTSERTVKAHRQQVMRKM 180 Query: 181 YAGSLAELVAAMTRY 195 YAGSLAELVAAMTRY Sbjct: 181 YAGSLAELVAAMTRY 195 >gi|300313791|ref|YP_003777883.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 206 Score = 99.0 bits (245), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/196 (38%), Positives = 105/196 (53%), Gaps = 13/196 (6%) Query: 8 HIVGGDDSLGGPLGRLLEEAGFHVAHHRSADQFLEHATATGPGGLVLAVNMRNMDAPQLR 67 +V D+ + L RLL AG+ SAD+FL+ P L+L + M D ++ Sbjct: 6 FVVDDDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSDGFEVV 65 Query: 68 SLLDEKKEGIPLIVITG--SQPGAAPLGQSSAQQ---EPEVAQQLVAAFREALMPYDESA 122 L+ + + IP+I I+G + P ++ A + +P ++L+ A EAL + A Sbjct: 66 RRLERRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEAL----QIA 121 Query: 123 PHQQQRRIHQA----RLATLTRREREVLMLLVKGRLNKQIAAELGTSERTVKAHRQQVMR 178 Q Q R A RL TLT REREVL L + G LNKQIA ELG SE TVK H+++VM Sbjct: 122 ERQLQSRTEHAACTSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVMD 181 Query: 179 KMYAGSLAELVAAMTR 194 KM +LA+LV A R Sbjct: 182 KMQTKTLADLVRAAER 197 >gi|300310669|ref|YP_003774761.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 214 Score = 75.5 bits (184), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 9/195 (4%) Query: 2 TNAHLAHIVGGDDSLGGPLGRLLEEAGFHVAHHRSADQFLEHATATGPGGLVLAVNMRNM 61 TN + +IV D+++ L LL + FL+ A L+L V M + Sbjct: 4 TNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMPEI 63 Query: 62 DAPQLRSLLDEKKEGIPLIVITGSQPGAAPL-------GQSSAQQEPEVAQQLVAAFREA 114 QL+ L E IP+I ++G G P+ G ++P +QQ++ + Sbjct: 64 SGFQLQDRLKEIGADIPVIFVSGH--GDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT 121 Query: 115 LMPYDESAPHQQQRRIHQARLATLTRREREVLMLLVKGRLNKQIAAELGTSERTVKAHRQ 174 L + + +R+ +ARL TLT RERE+L ++ G+ +K IA EL S +TV HR Sbjct: 122 LKHVAGNMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRA 181 Query: 175 QVMRKMYAGSLAELV 189 V K+ S A LV Sbjct: 182 SVKDKLGCQSTATLV 196 >gi|300310176|ref|YP_003774268.1| C4-dicarboxylate transport transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 196 Score = 60.8 bits (146), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 89/194 (45%), Gaps = 18/194 (9%) Query: 8 HIVGGDDSLGGPLGRLLEEAGFHVAHHRSADQFLEHATATGPG----GLVLAVNMRNMDA 63 HIV ++ + L L + S L A A PG G L +++R Sbjct: 3 HIVDDEEIIRDSLAWLARSRNIAATAYDSGPTLLA-ALAASPGIDAEGECLLLDVRMPGT 61 Query: 64 PQLRSLLDEKKEGI----PLIVITG--SQPGAAPLGQSSAQ---QEPEVAQQLVAAFREA 114 + D K +G+ P+I +TG P A + ++ A ++P QL+ EA Sbjct: 62 SGVALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLEA 121 Query: 115 LMPYDESAPHQQQRRIHQARLATLTRREREVLMLLVKGRLNKQIAAELGTSERTVKAHRQ 174 L S+ Q+RLA L+ REREVL L++ G++NK IA ELG S RTV+ HR Sbjct: 122 L----ASSRAGGAEDAVQSRLAALSVREREVLDLILAGKMNKVIADELGISMRTVEVHRA 177 Query: 175 QVMRKMYAGSLAEL 188 + KM + EL Sbjct: 178 HIFDKMNVKTAVEL 191 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.131 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 612,743 Number of extensions: 25669 Number of successful extensions: 124 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 122 Number of HSP's successfully gapped: 5 Length of query: 195 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 115 Effective length of database: 1,241,070 Effective search space: 142723050 Effective search space used: 142723050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)