BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0059.p
         (398 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313035|ref|YP_003777127.1| serine phosphatase, regulator o...   821   0.0  
gi|300311236|ref|YP_003775328.1| hypothetical protein Hsero_1911...    95   9e-21

>gi|300313035|ref|YP_003777127.1| serine phosphatase, regulator of
           sigma subunit [Herbaspirillum seropedicae SmR1]
          Length = 422

 Score =  821 bits (2120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/397 (100%), Positives = 397/397 (100%)

Query: 1   VQVPVVQFDQNNAAVLEIFDQHKELVSLPVVEQQRPIGLISRHIFMSQMSKPYHRELYER 60
           VQVPVVQFDQNNAAVLEIFDQHKELVSLPVVEQQRPIGLISRHIFMSQMSKPYHRELYER
Sbjct: 25  VQVPVVQFDQNNAAVLEIFDQHKELVSLPVVEQQRPIGLISRHIFMSQMSKPYHRELYER 84

Query: 61  KSCIAFMDKDPLIVDADTPIETLGALAVASGDKTLADGFMIVEQGQLNGLGSGLALMREL 120
           KSCIAFMDKDPLIVDADTPIETLGALAVASGDKTLADGFMIVEQGQLNGLGSGLALMREL
Sbjct: 85  KSCIAFMDKDPLIVDADTPIETLGALAVASGDKTLADGFMIVEQGQLNGLGSGLALMREL 144

Query: 121 VDLQVEKNRQVMQSIDYASVIQRAMLSASRAAMGAALQDACLIWEPRDVVGGDFYHFEEH 180
           VDLQVEKNRQVMQSIDYASVIQRAMLSASRAAMGAALQDACLIWEPRDVVGGDFYHFEEH
Sbjct: 145 VDLQVEKNRQVMQSIDYASVIQRAMLSASRAAMGAALQDACLIWEPRDVVGGDFYHFEEH 204

Query: 181 PQGWFAAVADCTGHGVPGAFLTLIASSALKQALELHGPRDPARLMQEVNRSMKRVLGQHG 240
           PQGWFAAVADCTGHGVPGAFLTLIASSALKQALELHGPRDPARLMQEVNRSMKRVLGQHG
Sbjct: 205 PQGWFAAVADCTGHGVPGAFLTLIASSALKQALELHGPRDPARLMQEVNRSMKRVLGQHG 264

Query: 241 AQDKPSESDDGMDACFFWFDSASRTLTCANAKMALFLLPAADEQVQTVEGKRVGLGYVDT 300
           AQDKPSESDDGMDACFFWFDSASRTLTCANAKMALFLLPAADEQVQTVEGKRVGLGYVDT
Sbjct: 265 AQDKPSESDDGMDACFFWFDSASRTLTCANAKMALFLLPAADEQVQTVEGKRVGLGYVDT 324

Query: 301 PEDMQWTNHCLPVADGDMVFVCTDGIIDQIGGAKHIAFGKQRLRRTLLEYRRLPLAELGR 360
           PEDMQWTNHCLPVADGDMVFVCTDGIIDQIGGAKHIAFGKQRLRRTLLEYRRLPLAELGR
Sbjct: 325 PEDMQWTNHCLPVADGDMVFVCTDGIIDQIGGAKHIAFGKQRLRRTLLEYRRLPLAELGR 384

Query: 361 TLMDVHRDYQGAQRRRDDISFFGARIGGVFSSQHEVQ 397
           TLMDVHRDYQGAQRRRDDISFFGARIGGVFSSQHEVQ
Sbjct: 385 TLMDVHRDYQGAQRRRDDISFFGARIGGVFSSQHEVQ 421


>gi|300311236|ref|YP_003775328.1| hypothetical protein Hsero_1911
           [Herbaspirillum seropedicae SmR1]
          Length = 600

 Score = 95.1 bits (235), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 75/120 (62%)

Query: 11  NNAAVLEIFDQHKELVSLPVVEQQRPIGLISRHIFMSQMSKPYHRELYERKSCIAFMDKD 70
           +N  V ++F    +L +LPVV    PIGLI+R+  + + ++ Y RELY +KSC  FMD +
Sbjct: 293 SNDTVYDMFVNDPQLQALPVVSNGLPIGLINRYSMVERFARLYGRELYGKKSCAFFMDPN 352

Query: 71  PLIVDADTPIETLGALAVASGDKTLADGFMIVEQGQLNGLGSGLALMRELVDLQVEKNRQ 130
           P++ +  T ++ L  L V +    L++GF+I ++GQ  GLG+G  L+RE+  +Q++  R 
Sbjct: 353 PILTEQSTSLQDLSNLLVHAESHHLSNGFIITDRGQYMGLGTGHDLLREITQMQIDAARH 412


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,241,181
Number of extensions: 51302
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 2
Length of query: 398
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 311
Effective length of database: 1,207,925
Effective search space: 375664675
Effective search space used: 375664675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)