BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0050.p (236 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313043|ref|YP_003777135.1| two component response regulato... 483 e-138 gi|300309981|ref|YP_003774073.1| two component response regulato... 86 3e-18 gi|300314013|ref|YP_003778105.1| two component response regulato... 80 2e-16 gi|300312688|ref|YP_003776780.1| response regulator consisting o... 79 4e-16 gi|300310849|ref|YP_003774941.1| two component transcription reg... 75 6e-15 >gi|300313043|ref|YP_003777135.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 236 Score = 483 bits (1244), Expect = e-138, Method: Compositional matrix adjust. Identities = 236/236 (100%), Positives = 236/236 (100%) Query: 1 MKVLIVESDLDWRNSLSAHMGDLGYETSVCATLGQAREVLRGRQPDILLTDVGLPDGSLL 60 MKVLIVESDLDWRNSLSAHMGDLGYETSVCATLGQAREVLRGRQPDILLTDVGLPDGSLL Sbjct: 1 MKVLIVESDLDWRNSLSAHMGDLGYETSVCATLGQAREVLRGRQPDILLTDVGLPDGSLL 60 Query: 61 PELASLRQHFPSMGIVVLTAAQRMEERIRCMSDGADYYLARPVKLEEVSATLTALARRMK 120 PELASLRQHFPSMGIVVLTAAQRMEERIRCMSDGADYYLARPVKLEEVSATLTALARRMK Sbjct: 61 PELASLRQHFPSMGIVVLTAAQRMEERIRCMSDGADYYLARPVKLEEVSATLTALARRMK 120 Query: 121 TVPHQSSPQSEKWAFNRRSGRLSSNGVTALQFTDKESTALAALLQSPNYPVSHGQLFDLL 180 TVPHQSSPQSEKWAFNRRSGRLSSNGVTALQFTDKESTALAALLQSPNYPVSHGQLFDLL Sbjct: 121 TVPHQSSPQSEKWAFNRRSGRLSSNGVTALQFTDKESTALAALLQSPNYPVSHGQLFDLL 180 Query: 181 RSGGEEYDAHRIDALIYRVRQKLRSLEESPMQIRNIYGEGFLMLRRNSSVDIVLEP 236 RSGGEEYDAHRIDALIYRVRQKLRSLEESPMQIRNIYGEGFLMLRRNSSVDIVLEP Sbjct: 181 RSGGEEYDAHRIDALIYRVRQKLRSLEESPMQIRNIYGEGFLMLRRNSSVDIVLEP 236 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 85.9 bits (211), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 13/227 (5%) Query: 1 MKVLIVESDLDWRNSLSAHMGDLGYETSVCATLGQAREVLRGRQPDILLTDVGLPDGSLL 60 M++L+ E D + L+ + GY +A L + D+L+ D+GLP S L Sbjct: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 61 PELASLRQHFPSMGIVVLTAAQRMEERIRCMSDGADYYLARPVKLEEVSATLTALARRMK 120 L LR + +++LTAA +E+R++ + GAD Y+A+P L E+ A + AL RR Sbjct: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 Query: 121 ----TVPHQSSPQSEKWAFNRRSGRLSSNGVTALQFTDKESTALAALLQSPNYPVSHGQL 176 TV ++ GR++ G L+ + +E L LLQ VS QL Sbjct: 121 GGGPTVIRHGPLSYDQ------VGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQL 174 Query: 177 FDLLRSGGEEYDAHRIDALIYRVRQKLRSLEESPMQIRNIYGEGFLM 223 D L GEE + I+ ++R+R+K +E ++I + G G+ + Sbjct: 175 VDHLCEWGEEVSNNAIEVYVHRLRKK---IEVGGVRIATVRGLGYCL 218 >gi|300314013|ref|YP_003778105.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 228 Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 111/227 (48%), Gaps = 5/227 (2%) Query: 1 MKVLIVESDLDWRNSLSAHMGDLGYETSVCATLGQAREVLRGRQPDILLTDVGLPDGSLL 60 M +L+VE D+D +L + G++ + CA A ++ D+++ D+ +P L Sbjct: 1 MHILLVEDDIDMSRALLRALERRGFQVTHCADGISALSHIKDGIGDLVVLDLNIPGLDGL 60 Query: 61 PELASLRQHFPSMGIVVLTAAQRMEERIRCMSDGADYYLARPVKLEEVSATLTALARRMK 120 L +R ++VLTA + +R+ ++ GAD YLA+P L+E+ A R + Sbjct: 61 HLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDAR-IRALLRRR 119 Query: 121 TVPHQSSPQSEKWAFNRRSGRLSSNGVTALQFTDKESTALAALLQSPNYPVSHGQLFDLL 180 T + + F+R SG G L+ T +E T L AL+ P + V+ +LF L+ Sbjct: 120 TNADDGVQRCGRLRFDRGSGAFYC-GDDPLELTPREHTLLKALIAKPGHAVTKEKLFRLV 178 Query: 181 RSGGEEYDAHRIDALIYRVRQKLRSLEESPMQIRNIYGEGFLMLRRN 227 E I+ +++RVR+KL E+ +I + G G+L+ R Sbjct: 179 FPMEESTQLEAIEVVVHRVRKKLM---ETGAEIMTLRGLGYLLRDRQ 222 >gi|300312688|ref|YP_003776780.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 78.6 bits (192), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 110/227 (48%), Gaps = 5/227 (2%) Query: 1 MKVLIVESDLDWRNSLSAHMGDLGYETSVCATLGQAREVLRGRQPDILLTDVGLPDGSLL 60 MK+L++E + + L + + ++ + A A +VLR D++L D+ LP Sbjct: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 Query: 61 PELASLRQHFPSMGIVVLTAAQRMEERIRCMSDGADYYLARPVKLEEVSATLTALARRMK 120 L LR+ + +++LTA+ ++E++ C+ GAD YL +P ++ E+ A + L RR + Sbjct: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRR-Q 119 Query: 121 TVPHQSSPQSEKWAFNRRSGRLSSNGVTALQFTDKESTALAALLQSPNYPVSHGQLFDLL 180 T + ++ + + + GVT L +E L L+ VS L + Sbjct: 120 TPDKAAEIHCGNLVYDSNTRQFAVGGVT-LALPAREHDVLEVLILRQGKTVSKTALMKGV 178 Query: 181 RSGGEEYDAHRIDALIYRVRQKLRSLEESPMQIRNIYGEGFLMLRRN 227 S EE A I+ I R+R+K L+ S I + G G+L+ +R+ Sbjct: 179 FSLSEEPSADAIEVYISRLRKK---LDRSGAAIMTLRGLGYLLRQRD 222 >gi|300310849|ref|YP_003774941.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 248 Score = 74.7 bits (182), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 107/229 (46%), Gaps = 11/229 (4%) Query: 3 VLIVESDLDWRNSLSAHMGDLGYETSVCATLGQAREVLRGRQPDILLTDVGLPDGSLLPE 62 +L+V+ D D R L+ ++ G T + R VL + D+++ D+ LP L Sbjct: 10 ILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPGEDGLTL 69 Query: 63 LASLRQHFPSMGIVVLTAAQRMEERIRCMSDGADYYLARPVKLEEVSATLTALARRMKTV 122 +LR S+ +++LTA +RI + GAD YLA+P + E+ A + ++ RR + + Sbjct: 70 CRNLRAT-SSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRTQAL 128 Query: 123 -PHQSSPQSEK-----WAFNRRSGRLSSNGVTALQFTDKESTALAALLQSPNYPVSHGQL 176 P+ + P W + + L + + + E L L PN ++ QL Sbjct: 129 PPNMAQPDVAAMRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPNRVLNRDQL 188 Query: 177 FDLLRSGGEEYDA--HRIDALIYRVRQKLRSLEESPMQIRNIYGEGFLM 223 +L + G E D +D I R+RQKL +P I+ + EG+++ Sbjct: 189 LEL--TQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVL 235 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 709,367 Number of extensions: 27630 Number of successful extensions: 173 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 164 Number of HSP's successfully gapped: 20 Length of query: 236 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 154 Effective length of database: 1,231,600 Effective search space: 189666400 Effective search space used: 189666400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)