BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0048.p (131 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313045|ref|YP_003777137.1| two component sensor histidine ... 244 1e-66 gi|300310565|ref|YP_003774657.1| response regulator containing a... 69 2e-13 gi|300311034|ref|YP_003775126.1| chemotaxis response regulator p... 62 2e-11 gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbas... 59 2e-10 gi|300312322|ref|YP_003776414.1| two component hybrid sensor his... 57 5e-10 >gi|300313045|ref|YP_003777137.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 120 Score = 244 bits (624), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 119/120 (99%), Positives = 120/120 (100%) Query: 12 LPLLLIVDDEVDITDTYSMLLELHGYRVITACHGADALDKARQHWPDLVISDCMMPVMNG 71 +PLLLIVDDEVDITDTYSMLLELHGYRVITACHGADALDKARQHWPDLVISDCMMPVMNG Sbjct: 1 MPLLLIVDDEVDITDTYSMLLELHGYRVITACHGADALDKARQHWPDLVISDCMMPVMNG 60 Query: 72 LELCAALRRLPGGAQLPVILCSGAPERHDLSQSSHNLFLRKPVFFDRLLEEIGRLLPGRP 131 LELCAALRRLPGGAQLPVILCSGAPERHDLSQSSHNLFLRKPVFFDRLLEEIGRLLPGRP Sbjct: 61 LELCAALRRLPGGAQLPVILCSGAPERHDLSQSSHNLFLRKPVFFDRLLEEIGRLLPGRP 120 >gi|300310565|ref|YP_003774657.1| response regulator containing a CheY-like receiver domain and an HD-GYP domain [Herbaspirillum seropedicae SmR1] Length = 348 Score = 68.6 bits (166), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 3/124 (2%) Query: 10 AALPLLLIVDDEVDITDTYSMLLELHGYRVITACHGADALDKARQHWPDLVISDCMMPVM 69 + + +L++ DD+ +++ ML ++ R+ T ALD ++H PDL++ D MMP M Sbjct: 2 SNMNILIVDDDKTNLSLFSHMLGQVPQTRIDTCADARQALDWCQEHAPDLILLDYMMPGM 61 Query: 70 NGLELCAALRRLPGGAQLPVILCS---GAPERHDLSQSSHNLFLRKPVFFDRLLEEIGRL 126 +GL+ + R +PG PVI+ + G RH Q S N FL KPV LL + + Sbjct: 62 DGLDFLSRFRAMPGQEMTPVIMITADMGLQVRHTALQMSANDFLSKPVNRVELLARVKNM 121 Query: 127 LPGR 130 L R Sbjct: 122 LAMR 125 >gi|300311034|ref|YP_003775126.1| chemotaxis response regulator protein [Herbaspirillum seropedicae SmR1] Length = 126 Score = 61.6 bits (148), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 4/119 (3%) Query: 15 LLIVDDEVDITDTYSMLLELHGYRVITACHGADALDKARQHW-PDLVISDCMMPVMNGLE 73 + +VDD + + LE+ G+ V TA G AL K + + PDL+I+D MP M+GLE Sbjct: 7 IFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMDGLE 66 Query: 74 LCAALRRLPGGAQLPVILC---SGAPERHDLSQSSHNLFLRKPVFFDRLLEEIGRLLPG 129 L +R LPG +P++ S + +R + ++ +L KPV LL+ + ++LPG Sbjct: 67 LIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVLPG 125 >gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbaspirillum seropedicae SmR1] Length = 121 Score = 58.5 bits (140), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 3/116 (2%) Query: 15 LLIVDDEVDITDTYSMLLELHGYRVITACHGADALDKARQHWPDLVISDCMMPVMNGLEL 74 +L VDD + L+ GY V A G DAL+KA+ DLV++D MP M+GL L Sbjct: 5 ILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAKSQTFDLVLTDQNMPRMDGLTL 64 Query: 75 CAALRRLPGGAQLPVILCSGA---PERHDLSQSSHNLFLRKPVFFDRLLEEIGRLL 127 +LR L A++P+++ + + + N +L KP RL E + +++ Sbjct: 65 IRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 120 >gi|300312322|ref|YP_003776414.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 775 Score = 57.0 bits (136), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 3/114 (2%) Query: 10 AALPLLLIVDDEVDITDTYSMLLELHGYRVITACHGADALDKARQHWPDLVISDCMMPVM 69 AA +L+VDD + + + LL GY+V A G D + R DLVI+D MP M Sbjct: 650 AARKKVLVVDDSLTVRELERKLLTNRGYQVTVAVDGMDGWNAVRADSFDLVITDIDMPRM 709 Query: 70 NGLELCAALRRLPGGAQLPVILCSGAPERHDLS---QSSHNLFLRKPVFFDRLL 120 +G+EL + +R LPV++ S D ++ + + K F D L Sbjct: 710 DGIELVSLIRGAANLQSLPVMIVSYKDREEDRQRGLEAGADHYFTKSSFHDESL 763 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.141 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 397,150 Number of extensions: 16010 Number of successful extensions: 156 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 167 Number of HSP's successfully gapped: 9 Length of query: 131 Length of database: 1,619,870 Length adjustment: 75 Effective length of query: 56 Effective length of database: 1,264,745 Effective search space: 70825720 Effective search space used: 70825720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 125 (52.8 bits)