BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0045.p (517 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I p... 1020 0.0 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 528 e-151 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 527 e-151 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 505 e-144 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 486 e-138 >gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 1020 bits (2638), Expect = 0.0, Method: Compositional matrix adjust. Identities = 515/516 (99%), Positives = 515/516 (99%) Query: 2 MGWFKNLKIARKLQLAFLAVLVLMAILGIFSISQLAKVKNASSEISTDWMPAQKKLGDLK 61 MGWFKNLKIARKLQLAFLAVLVLMAILGIFSISQLAKVKNASSEISTDWMPAQKKLGDLK Sbjct: 1 MGWFKNLKIARKLQLAFLAVLVLMAILGIFSISQLAKVKNASSEISTDWMPAQKKLGDLK 60 Query: 62 LYFVRLRGTESQLAIYDGDVEAMNGLVSRSQVILTGLDKTMKDYEASLDNVPERELYTKV 121 LYFVRLRGTESQLAIYDGDVEAMNGLVSRSQ ILTGLDKTMKDYEASLDNVPERELYTKV Sbjct: 61 LYFVRLRGTESQLAIYDGDVEAMNGLVSRSQAILTGLDKTMKDYEASLDNVPERELYTKV 120 Query: 122 AGQIGEFLAEHKKIVAAFLARDNPQGRDLFLGYSNKLYPQILGDLEKLIKINQDGGNAAT 181 AGQIGEFLAEHKKIVAAFLARDNPQGRDLFLGYSNKLYPQILGDLEKLIKINQDGGNAAT Sbjct: 121 AGQIGEFLAEHKKIVAAFLARDNPQGRDLFLGYSNKLYPQILGDLEKLIKINQDGGNAAT 180 Query: 182 ADADDTFSKSRVGVLVLLAAALAIGMGLALYVARIIARPLQDAVDIARRVAEGDLGAQIQ 241 ADADDTFSKSRVGVLVLLAAALAIGMGLALYVARIIARPLQDAVDIARRVAEGDLGAQIQ Sbjct: 181 ADADDTFSKSRVGVLVLLAAALAIGMGLALYVARIIARPLQDAVDIARRVAEGDLGAQIQ 240 Query: 242 VQSKDETGQLMQALDTMNEGLRKVVGQVRSGTDSIATASTEIATGNLDLSRRTEQQATAL 301 VQSKDETGQLMQALDTMNEGLRKVVGQVRSGTDSIATASTEIATGNLDLSRRTEQQATAL Sbjct: 241 VQSKDETGQLMQALDTMNEGLRKVVGQVRSGTDSIATASTEIATGNLDLSRRTEQQATAL 300 Query: 302 EETASALEELTSTVKQNTDNARQANQLAMAASGVAARGGGVVGQVVETMEAINEASNRIV 361 EETASALEELTSTVKQNTDNARQANQLAMAASGVAARGGGVVGQVVETMEAINEASNRIV Sbjct: 301 EETASALEELTSTVKQNTDNARQANQLAMAASGVAARGGGVVGQVVETMEAINEASNRIV 360 Query: 362 EIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLID 421 EIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLID Sbjct: 361 EIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLID 420 Query: 422 DSVSKVGAGTSLVRQAGSTMSEVVESVKRVTDVVSEISAASTEQSVGIDEINRAVTQMDE 481 DSVSKVGAGTSLVRQAGSTMSEVVESVKRVTDVVSEISAASTEQSVGIDEINRAVTQMDE Sbjct: 421 DSVSKVGAGTSLVRQAGSTMSEVVESVKRVTDVVSEISAASTEQSVGIDEINRAVTQMDE 480 Query: 482 VTQQNAALVEEAAAAAQSMQEQASRLAATVSVFKLR 517 VTQQNAALVEEAAAAAQSMQEQASRLAATVSVFKLR Sbjct: 481 VTQQNAALVEEAAAAAQSMQEQASRLAATVSVFKLR 516 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 528 bits (1361), Expect = e-151, Method: Compositional matrix adjust. Identities = 305/524 (58%), Positives = 389/524 (74%), Gaps = 17/524 (3%) Query: 2 MGWFKNLKIARKLQLAFLAVLVLMAILGIFSISQLAKVKNASSEISTDWMPAQKKLGDLK 61 M WF NLKIA+KL ++F AV+VL ILG+F+I +L V AS++++T+W+P K ++ Sbjct: 1 MTWFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 Query: 62 LYFVRLRGTESQLAIYDGDVE---AMNGLVSRSQVILTGLDKTMKDYEASLDNVPERELY 118 R+R +E Q+ E A+ + SR L L K YEA + E+ LY Sbjct: 61 ASLPRMRISELQMVTAATPAEREDALKAIKSR----LDILAKQRAAYEAQISEAEEKVLY 116 Query: 119 TKVAGQIGEFLAEHKKIVAAFLARDNPQGRD-----LFLGYSNKLYPQILGDLEKLIKIN 173 K + +L K+ LAR + +G++ LF G SNK + ++ +++++IK+N Sbjct: 117 EKFSKSFATYLEIDKE-----LARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVN 171 Query: 174 QDGGNAATADADDTFSKSRVGVLVLLAAALAIGMGLALYVARIIARPLQDAVDIARRVAE 233 G + A+ + + + ++ LLAA + I +GLA+ VAR ++RPL +AV +A RVA+ Sbjct: 172 DAGSKRSDDMAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQ 231 Query: 234 GDLGAQIQVQSKDETGQLMQALDTMNEGLRKVVGQVRSGTDSIATASTEIATGNLDLSRR 293 GDL I+ S DETG LM +L MN+ L+++VG+VR+GTD+I TAS EIATGNLDLS R Sbjct: 232 GDLTMDIRATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSR 291 Query: 294 TEQQATALEETASALEELTSTVKQNTDNARQANQLAMAASGVAARGGGVVGQVVETMEAI 353 TE+QA +LEETASA+EELT+TVKQN DNARQANQLA +AS +A +GG VVGQVV+TME I Sbjct: 292 TEEQAGSLEETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGI 351 Query: 354 NEASNRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAA 413 E+SNRI +IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAA Sbjct: 352 TESSNRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAA 411 Query: 414 KEIKQLIDDSVSKVGAGTSLVRQAGSTMSEVVESVKRVTDVVSEISAASTEQSVGIDEIN 473 KEIKQLIDDSV KVGAG+ LV +AG+TMSEVV SV+RVTDVV+EISAAS EQS GI+EIN Sbjct: 412 KEIKQLIDDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEIN 471 Query: 474 RAVTQMDEVTQQNAALVEEAAAAAQSMQEQASRLAATVSVFKLR 517 RA+TQMDEVTQQNAALVEEAAAAAQS+Q+QA+RL+ VSVFKL+ Sbjct: 472 RAITQMDEVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKLQ 515 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 527 bits (1358), Expect = e-151, Method: Compositional matrix adjust. Identities = 290/515 (56%), Positives = 384/515 (74%) Query: 2 MGWFKNLKIARKLQLAFLAVLVLMAILGIFSISQLAKVKNASSEISTDWMPAQKKLGDLK 61 M WF N +IA KL LAF VL+L LGIFSI QL KV A++E++T+W+P+ + L D+K Sbjct: 1 MNWFYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMK 60 Query: 62 LYFVRLRGTESQLAIYDGDVEAMNGLVSRSQVILTGLDKTMKDYEASLDNVPERELYTKV 121 + R+R ++QLA+YDGD + + ++ L L + K Y + E+ L+ V Sbjct: 61 VALSRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGV 120 Query: 122 AGQIGEFLAEHKKIVAAFLARDNPQGRDLFLGYSNKLYPQILGDLEKLIKINQDGGNAAT 181 +I +F+A H +AA A + + L LG + + Y +L DL+KL ++N DG +T Sbjct: 121 NARIDKFIALHGDTLAAVRAGKLDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQST 180 Query: 182 ADADDTFSKSRVGVLVLLAAALAIGMGLALYVARIIARPLQDAVDIARRVAEGDLGAQIQ 241 A+ T+ +++V V+ +L AL G+ LAL++AR+IA PL+ A + A +A GDL A I Sbjct: 181 RSAETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADIT 240 Query: 242 VQSKDETGQLMQALDTMNEGLRKVVGQVRSGTDSIATASTEIATGNLDLSRRTEQQATAL 301 +S DETGQL AL MN LR++V QVRSGTD+IATAS +I++GNLDLS RTE+QA++L Sbjct: 241 ARSDDETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASSL 300 Query: 302 EETASALEELTSTVKQNTDNARQANQLAMAASGVAARGGGVVGQVVETMEAINEASNRIV 361 EETASA+EELTSTV+QN +NARQANQLA++AS +A GG VV QV+ETM +I+ +S +IV Sbjct: 301 EETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKIV 360 Query: 362 EIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLID 421 +IISVID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK LID Sbjct: 361 DIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLID 420 Query: 422 DSVSKVGAGTSLVRQAGSTMSEVVESVKRVTDVVSEISAASTEQSVGIDEINRAVTQMDE 481 +SV +VG G+ LV++AG T+SEVV SV+RVTDV+SEISAAS EQ+ GI+++N+A+TQMDE Sbjct: 421 NSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDE 480 Query: 482 VTQQNAALVEEAAAAAQSMQEQASRLAATVSVFKL 516 VTQQNAALVEEAA+A+QS+ QA RL+ V VF+L Sbjct: 481 VTQQNAALVEEAASASQSLSHQAQRLSELVGVFRL 515 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 505 bits (1301), Expect = e-144, Method: Compositional matrix adjust. Identities = 291/515 (56%), Positives = 379/515 (73%), Gaps = 1/515 (0%) Query: 2 MGWFKNLKIARKLQLAFLAVLVLMAILGIFSISQLAKVKNASSEISTDWMPAQKKLGDLK 61 M WF +L+I+RKL FL V+ ++A LG+FSI QL +V +AS+EIST+W+P+ + L L+ Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQ 60 Query: 62 LYFVRLRGTESQLAIYDGDVEAMNGLVSRSQVILTGLDKTMKDYEASLDNVPERELYTKV 121 L RLR E Q I D + + QV + L +Y + E+ +Y +V Sbjct: 61 LAMSRLRSFELQ-HILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEV 119 Query: 122 AGQIGEFLAEHKKIVAAFLARDNPQGRDLFLGYSNKLYPQILGDLEKLIKINQDGGNAAT 181 I F++EH KI+A + + R+L G S K Y L ++KL +N G + + Sbjct: 120 EKLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISN 179 Query: 182 ADADDTFSKSRVGVLVLLAAALAIGMGLALYVARIIARPLQDAVDIARRVAEGDLGAQIQ 241 AD ++++R+ ++V +AA + + M LA++V+R+IARPL++AV +A+RVA GDL +I+ Sbjct: 180 KQADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIE 239 Query: 242 VQSKDETGQLMQALDTMNEGLRKVVGQVRSGTDSIATASTEIATGNLDLSRRTEQQATAL 301 KDETGQL+ AL +MN+ L +VGQVR GT +I TASTEIA+GNLDLS RTE+QA++L Sbjct: 240 PAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSL 299 Query: 302 EETASALEELTSTVKQNTDNARQANQLAMAASGVAARGGGVVGQVVETMEAINEASNRIV 361 EETASA+EELTSTVKQN DNARQANQLA++AS VA++GG VV QVV+TM +IN +S +I Sbjct: 300 EETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIA 359 Query: 362 EIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLID 421 +II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK+LI+ Sbjct: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIE 419 Query: 422 DSVSKVGAGTSLVRQAGSTMSEVVESVKRVTDVVSEISAASTEQSVGIDEINRAVTQMDE 481 SV++V G+ LV +AG TMSEVV+SV+RVTD+V EIS+AS EQS GI+++N A+ QMDE Sbjct: 420 GSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDE 479 Query: 482 VTQQNAALVEEAAAAAQSMQEQASRLAATVSVFKL 516 VTQQNAALVEEAAAAAQS+QEQA L TV FKL Sbjct: 480 VTQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKL 514 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 486 bits (1250), Expect = e-138, Method: Compositional matrix adjust. Identities = 287/517 (55%), Positives = 361/517 (69%), Gaps = 5/517 (0%) Query: 2 MGWFKNLKIARKLQLAFLAVLVLMAILGIFSISQLAKVKNASSEISTDWMPAQKKLGDLK 61 M WF NL IA+KL L+F V+ L + G+F+I +L +V AS EI + WMP +L+ Sbjct: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ 60 Query: 62 LYFVRLRGTESQL--AIYDGDVEAMNGLVSRSQVILTGLDKTMKDYEASLDNVPERELYT 119 LR E +L A+ + A N + L L + +E + E+E Y Sbjct: 61 GSLPPLRLNELELVTAVTPQERAAANKAIKDR---LDALTRQRAIFEQRMSEPQEKEQYA 117 Query: 120 KVAGQIGEFLAEHKKIVAAFLARDNPQGRDLFLGYSNKLYPQILGDLEKLIKINQDGGNA 179 + + ++ +++ + + R LF G S KLY ++G+L+ ++KIN G Sbjct: 118 QFLKNLTAYVKVDEQLAEMAANQQYDETRALFNGDSAKLYRSMVGNLDAIVKINTSGSAQ 177 Query: 180 ATADADDTFSKSRVGVLVLLAAALAIGMGLALYVARIIARPLQDAVDIARRVAEGDLGAQ 239 A +A F ++ ++ LLAA + I LA VA ++RPL++AV IA+RVA GDL + Sbjct: 178 ADEEASTVFRGAQRWIVGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTLR 237 Query: 240 IQVQSKDETGQLMQALDTMNEGLRKVVGQVRSGTDSIATASTEIATGNLDLSRRTEQQAT 299 I+ +DETG LM+AL MNE LR +V +VR GTD+I TAS EIA GNLDLS RTEQQA Sbjct: 238 IRPAGRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAG 297 Query: 300 ALEETASALEELTSTVKQNTDNARQANQLAMAASGVAARGGGVVGQVVETMEAINEASNR 359 +LEETASA+EELTSTV QN DNARQANQLA AS +A++GG VVGQVV+TME I E+S R Sbjct: 298 SLEETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRR 357 Query: 360 IVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQL 419 I +IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK+L Sbjct: 358 IADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKEL 417 Query: 420 IDDSVSKVGAGTSLVRQAGSTMSEVVESVKRVTDVVSEISAASTEQSVGIDEINRAVTQM 479 IDDSV KV AG++LV +AGSTM+EVV SV+RVTDVV+EISAA+ EQS GI+E+N A+TQM Sbjct: 418 IDDSVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQM 477 Query: 480 DEVTQQNAALVEEAAAAAQSMQEQASRLAATVSVFKL 516 DE TQQNAALVE+AAAAA S++ QAS LAA V FKL Sbjct: 478 DETTQQNAALVEQAAAAADSLKGQASNLAAVVGKFKL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.128 0.329 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 972,111 Number of extensions: 31088 Number of successful extensions: 387 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 220 Number of HSP's successfully gapped: 72 Length of query: 517 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 428 Effective length of database: 1,198,455 Effective search space: 512938740 Effective search space used: 512938740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)