BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0036.p (260 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313062|ref|YP_003777154.1| IclR family transcription regul... 533 e-153 gi|300313063|ref|YP_003777155.1| transcription regulator protein... 207 5e-55 gi|300313272|ref|YP_003777364.1| transcription regulator protein... 201 5e-53 gi|300313290|ref|YP_003777382.1| IclR family transcription regul... 141 5e-35 gi|300310493|ref|YP_003774585.1| transcription regulator protein... 97 2e-21 >gi|300313062|ref|YP_003777154.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 533 bits (1374), Expect = e-153, Method: Compositional matrix adjust. Identities = 260/260 (100%), Positives = 260/260 (100%) Query: 1 MIDQSPVDLDIQKRDLIEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTL 60 MIDQSPVDLDIQKRDLIEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTL Sbjct: 1 MIDQSPVDLDIQKRDLIEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTL 60 Query: 61 VHTGMAASDGKKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDE 120 VHTGMAASDGKKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDE Sbjct: 61 VHTGMAASDGKKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDE 120 Query: 121 IVYVTRVTAAQLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAM 180 IVYVTRVTAAQLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAM Sbjct: 121 IVYVTRVTAAQLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAM 180 Query: 181 TDKAALFQEILTMRRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACSREE 240 TDKAALFQEILTMRRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACSREE Sbjct: 181 TDKAALFQEILTMRRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACSREE 240 Query: 241 AIARGVPALQTTANTLMMWV 260 AIARGVPALQTTANTLMMWV Sbjct: 241 AIARGVPALQTTANTLMMWV 260 >gi|300313063|ref|YP_003777155.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 207 bits (528), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 106/252 (42%), Positives = 164/252 (65%) Query: 6 PVDLDIQKRDLIEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTLVHTGM 65 P + + +RD I GL KG ++ AFD D+ ++++++VA R GL+R+AARRYLLTL H G Sbjct: 19 PTEGGLSRRDWIAGLEKGLLILEAFDFDNQRMTSAQVAARTGLSRTAARRYLLTLEHLGY 78 Query: 66 AASDGKKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVT 125 S+GK F L PR+L +G SY +SA +PR + PFLQ++T Q E+ S+LDG ++V++ Sbjct: 79 LHSEGKTFALTPRVLKVGWSYFDSAPLPRILQPFLQQITGQTGEAVYASVLDGWDLVFIA 138 Query: 126 RVTAAQLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAMTDKAA 185 R A +++ GF G R+PA + G V+L + +++ +L + P T +TD Sbjct: 139 RNGATRVMTTGFVLGARVPAQLASPGIVMLSALPEQQVRDWLATCAMTPFTPHTITDPDQ 198 Query: 186 LFQEILTMRRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACSREEAIARG 245 L+ I R+ GY + E Q + G+RGIA+ +KNR+ +VIGALS++ +AA +RE+ +AR Sbjct: 199 LYALIAQARQLGYAVVEQQLQTGVRGIAVPLKNRHAKVIGALSLSLPMAAEAREQTLARI 258 Query: 246 VPALQTTANTLM 257 +PALQ AN L+ Sbjct: 259 LPALQQAANALI 270 >gi|300313272|ref|YP_003777364.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 266 Score = 201 bits (511), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 109/250 (43%), Positives = 151/250 (60%), Gaps = 2/250 (0%) Query: 2 IDQSPVDLD--IQKRDLIEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLT 59 ID+ P D D KRDL+ GL KG VI AFD + +L+ +EVA+ GLTR+AARRYL+T Sbjct: 6 IDEEPGDADEGPLKRDLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAARRYLIT 65 Query: 60 LVHTGMAASDGKKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGD 119 L H G D K F L P +L LGQSYL SAR+PR V P L RL L E+ + +LD D Sbjct: 66 LTHLGYMRHDNKTFSLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHD 125 Query: 120 EIVYVTRVTAAQLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMA 179 ++V V V+A QLV+ +PGTR+PAY T GR+LL A++ A L R T Sbjct: 126 QLVCVAAVSAGQLVSTTLQPGTRVPAYCTANGRILLANLPPAQLDAILARAQPEAITAHT 185 Query: 180 MTDKAALFQEILTMRRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACSRE 239 +TD L EI R QGY + + + E+G+R +A+ V+N G V+ A++++ + E Sbjct: 186 ITDVERLGLEIARARVQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAGRMKLE 245 Query: 240 EAIARGVPAL 249 + + R +PA+ Sbjct: 246 DMVERCLPAM 255 >gi|300313290|ref|YP_003777382.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 141 bits (356), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 126/222 (56%) Query: 16 LIEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTLVHTGMAASDGKKFWL 75 + L +G VI AF L+ ++++++ G+ R+A RR L TL G A SD F L Sbjct: 15 FMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQLGYADSDVNNFSL 74 Query: 76 MPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTRVTAAQLVNA 135 P++L LG SYL S + + P+L +++ L ES + ++LD E++YV R A+++++ Sbjct: 75 RPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEVLYVARSAASRVMSV 134 Query: 136 GFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAMTDKAALFQEILTMRR 195 G+RLPAY T+ GR +L + +++AY ++V L T + + L + +R Sbjct: 135 ALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVVSQKRLRDILAGVRA 194 Query: 196 QGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACS 237 GY + + + E+G+R IA+ V+ +G V+ AL+V + A S Sbjct: 195 NGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVS 236 >gi|300310493|ref|YP_003774585.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 96.7 bits (239), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 111/236 (47%), Gaps = 4/236 (1%) Query: 10 DIQKRDLI--EGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTLVHTGMAA 67 D DL+ + L KG V+ AF++ ++ +VA G+++S+A+R + TL G Sbjct: 5 DDTASDLLFNQSLEKGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETLGYIC 64 Query: 68 SDGK--KFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVT 125 K ++ L P+++ +G +YL + + PFL L E+ N + E+VYV Sbjct: 65 KHPKTRRYQLTPKVMEVGYNYLAADILVDVANPFLSELANITGETVNLTEPYDGEMVYVA 124 Query: 126 RVTAAQLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAMTDKAA 185 R A++ + G+R+P Y T +GR L E E QA LE HT TD Sbjct: 125 RFVASKFIPIHMPIGSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRTDVED 184 Query: 186 LFQEILTMRRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACSREEA 241 + Q + R +G+ + +G IA V N + + ++ V + + S EEA Sbjct: 185 IMQLLAASRERGFASNREELFLGDMSIASPVFNSERKPVASVHVVAPTSRWSVEEA 240 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 752,758 Number of extensions: 29473 Number of successful extensions: 130 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 127 Number of HSP's successfully gapped: 9 Length of query: 260 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 177 Effective length of database: 1,226,865 Effective search space: 217155105 Effective search space used: 217155105 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)