BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0035.p (273 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313063|ref|YP_003777155.1| transcription regulator protein... 551 e-158 gi|300313062|ref|YP_003777154.1| IclR family transcription regul... 208 5e-55 gi|300313272|ref|YP_003777364.1| transcription regulator protein... 204 8e-54 gi|300313290|ref|YP_003777382.1| IclR family transcription regul... 165 4e-42 gi|300310493|ref|YP_003774585.1| transcription regulator protein... 135 3e-33 >gi|300313063|ref|YP_003777155.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 551 bits (1420), Expect = e-158, Method: Compositional matrix adjust. Identities = 272/273 (99%), Positives = 272/273 (99%) Query: 1 MNERDKNGPADDSREVGEPTEGGLSRRDWIAGLEKGLLILEAFDFDNQRMTSAQVAARTG 60 MNERDKNGPADDSREV EPTEGGLSRRDWIAGLEKGLLILEAFDFDNQRMTSAQVAARTG Sbjct: 1 MNERDKNGPADDSREVCEPTEGGLSRRDWIAGLEKGLLILEAFDFDNQRMTSAQVAARTG 60 Query: 61 LSRTAARRYLLTLEHLGYLHSEGKTFALTPRVLKVGWSYFDSAPLPRILQPFLQQITGQT 120 LSRTAARRYLLTLEHLGYLHSEGKTFALTPRVLKVGWSYFDSAPLPRILQPFLQQITGQT Sbjct: 61 LSRTAARRYLLTLEHLGYLHSEGKTFALTPRVLKVGWSYFDSAPLPRILQPFLQQITGQT 120 Query: 121 GEAVYASVLDGWDLVFIARNGATRVMTTGFVLGARVPAQLASPGIVMLSALPEQQVRDWL 180 GEAVYASVLDGWDLVFIARNGATRVMTTGFVLGARVPAQLASPGIVMLSALPEQQVRDWL Sbjct: 121 GEAVYASVLDGWDLVFIARNGATRVMTTGFVLGARVPAQLASPGIVMLSALPEQQVRDWL 180 Query: 181 ATCAMTPFTPHTITDPDQLYALIAQARQLGYAVVEQQLQTGVRGIAVPLKNRHAKVIGAL 240 ATCAMTPFTPHTITDPDQLYALIAQARQLGYAVVEQQLQTGVRGIAVPLKNRHAKVIGAL Sbjct: 181 ATCAMTPFTPHTITDPDQLYALIAQARQLGYAVVEQQLQTGVRGIAVPLKNRHAKVIGAL 240 Query: 241 SLSLPMAAEAREQTLARILPALQQAANALINLV 273 SLSLPMAAEAREQTLARILPALQQAANALINLV Sbjct: 241 SLSLPMAAEAREQTLARILPALQQAANALINLV 273 >gi|300313062|ref|YP_003777154.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 208 bits (529), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 106/252 (42%), Positives = 164/252 (65%) Query: 19 PTEGGLSRRDWIAGLEKGLLILEAFDFDNQRMTSAQVAARTGLSRTAARRYLLTLEHLGY 78 P + + +RD I GL KG ++ AFD D+ ++++++VA R GL+R+AARRYLLTL H G Sbjct: 6 PVDLDIQKRDLIEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTLVHTGM 65 Query: 79 LHSEGKTFALTPRVLKVGWSYFDSAPLPRILQPFLQQITGQTGEAVYASVLDGWDLVFIA 138 S+GK F L PR+L +G SY +SA +PR + PFLQ++T Q E+ S+LDG ++V++ Sbjct: 66 AASDGKKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVT 125 Query: 139 RNGATRVMTTGFVLGARVPAQLASPGIVMLSALPEQQVRDWLATCAMTPFTPHTITDPDQ 198 R A +++ GF G R+PA + G V+L + +++ +L + P T +TD Sbjct: 126 RVTAAQLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAMTDKAA 185 Query: 199 LYALIAQARQLGYAVVEQQLQTGVRGIAVPLKNRHAKVIGALSLSLPMAAEAREQTLARI 258 L+ I R+ GY + E Q + G+RGIA+ +KNR+ +VIGALS++ +AA +RE+ +AR Sbjct: 186 LFQEILTMRRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACSREEAIARG 245 Query: 259 LPALQQAANALI 270 +PALQ AN L+ Sbjct: 246 VPALQTTANTLM 257 >gi|300313272|ref|YP_003777364.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 266 Score = 204 bits (518), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 113/248 (45%), Positives = 160/248 (64%), Gaps = 1/248 (0%) Query: 15 EVGEPTEGGLSRRDWIAGLEKGLLILEAFDFDNQRMTSAQVAARTGLSRTAARRYLLTLE 74 E G+ EG L +RD +AGLEKGL ++EAFD + R+T A+VA TGL+R AARRYL+TL Sbjct: 9 EPGDADEGPL-KRDLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAARRYLITLT 67 Query: 75 HLGYLHSEGKTFALTPRVLKVGWSYFDSAPLPRILQPFLQQITGQTGEAVYASVLDGWDL 134 HLGY+ + KTF+LTP VL++G SY SA LPRI+QP L ++ GEA VLD L Sbjct: 68 HLGYMRHDNKTFSLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHDQL 127 Query: 135 VFIARNGATRVMTTGFVLGARVPAQLASPGIVMLSALPEQQVRDWLATCAMTPFTPHTIT 194 V +A A ++++T G RVPA + G ++L+ LP Q+ LA T HTIT Sbjct: 128 VCVAAVSAGQLVSTTLQPGTRVPAYCTANGRILLANLPPAQLDAILARAQPEAITAHTIT 187 Query: 195 DPDQLYALIAQARQLGYAVVEQQLQTGVRGIAVPLKNRHAKVIGALSLSLPMAAEAREQT 254 D ++L IA+AR GYA+V+Q+L+ G+R +AVP++N +V+ A+++S+ E Sbjct: 188 DVERLGLEIARARVQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAGRMKLEDM 247 Query: 255 LARILPAL 262 + R LPA+ Sbjct: 248 VERCLPAM 255 >gi|300313290|ref|YP_003777382.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 165 bits (417), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 85/241 (35%), Positives = 139/241 (57%) Query: 29 WIAGLEKGLLILEAFDFDNQRMTSAQVAARTGLSRTAARRYLLTLEHLGYLHSEGKTFAL 88 ++ L +GL ++ AF + +T AQ++ +TG+ R A RR L TL+ LGY S+ F+L Sbjct: 15 FMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQLGYADSDVNNFSL 74 Query: 89 TPRVLKVGWSYFDSAPLPRILQPFLQQITGQTGEAVYASVLDGWDLVFIARNGATRVMTT 148 P++L +G+SY S PL QP+L I+ GE+ +VLD +++++AR+ A+RVM+ Sbjct: 75 RPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEVLYVARSAASRVMSV 134 Query: 149 GFVLGARVPAQLASPGIVMLSALPEQQVRDWLATCAMTPFTPHTITDPDQLYALIAQARQ 208 G+R+PA S G ML+ LPE Q++ + + T T+ +L ++A R Sbjct: 135 ALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVVSQKRLRDILAGVRA 194 Query: 209 LGYAVVEQQLQTGVRGIAVPLKNRHAKVIGALSLSLPMAAEAREQTLARILPALQQAANA 268 GYAV++++L+ G+R IAVP++ V+ AL++ A + Q ILP L + A Sbjct: 195 NGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQMEEEILPVLLRGAQE 254 Query: 269 L 269 L Sbjct: 255 L 255 >gi|300310493|ref|YP_003774585.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 135 bits (341), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 139/244 (56%), Gaps = 2/244 (0%) Query: 32 GLEKGLLILEAFDFDNQRMTSAQVAARTGLSRTAARRYLLTLEHLGYL--HSEGKTFALT 89 LEKGL +L AF+ ++ MT VA+ TG+S+++A+R + TLE LGY+ H + + + LT Sbjct: 16 SLEKGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETLGYICKHPKTRRYQLT 75 Query: 90 PRVLKVGWSYFDSAPLPRILQPFLQQITGQTGEAVYASVLDGWDLVFIARNGATRVMTTG 149 P+V++VG++Y + L + PFL ++ TGE V + ++V++AR A++ + Sbjct: 76 PKVMEVGYNYLAADILVDVANPFLSELANITGETVNLTEPYDGEMVYVARFVASKFIPIH 135 Query: 150 FVLGARVPAQLASPGIVMLSALPEQQVRDWLATCAMTPFTPHTITDPDQLYALIAQARQL 209 +G+R+P + G LSAL ++ + L + T TPHT TD + + L+A +R+ Sbjct: 136 MPIGSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRTDVEDIMQLLAASRER 195 Query: 210 GYAVVEQQLQTGVRGIAVPLKNRHAKVIGALSLSLPMAAEAREQTLARILPALQQAANAL 269 G+A ++L G IA P+ N K + ++ + P + + E+ ++ P + + A A+ Sbjct: 196 GFASNREELFLGDMSIASPVFNSERKPVASVHVVAPTSRWSVEEAEKKLGPLVLECARAI 255 Query: 270 INLV 273 N V Sbjct: 256 SNSV 259 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 857,159 Number of extensions: 36401 Number of successful extensions: 133 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 133 Number of HSP's successfully gapped: 9 Length of query: 273 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 189 Effective length of database: 1,222,130 Effective search space: 230982570 Effective search space used: 230982570 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)