BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0033.p (301 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313065|ref|YP_003777157.1| LysR family transcription regul... 606 e-175 gi|300312334|ref|YP_003776426.1| transcription regulator protein... 180 1e-46 gi|300310802|ref|YP_003774894.1| LysR family transcription regul... 157 1e-39 gi|300311458|ref|YP_003775550.1| LysR family transcription regul... 151 7e-38 gi|300312196|ref|YP_003776288.1| LysR family transcription regul... 149 3e-37 >gi|300313065|ref|YP_003777157.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 606 bits (1563), Expect = e-175, Method: Compositional matrix adjust. Identities = 300/301 (99%), Positives = 301/301 (100%) Query: 1 MIRLEDLAIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP 60 MIRLEDLAIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP Sbjct: 1 MIRLEDLAIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP 60 Query: 61 DGERYLQHARNVLAEVNAGRDAVAHGRRVIGGNLSLSAPSDFGRNLIGQWLDEFQAQHPA 120 DGERYLQHARNVLAEVNAGRDAVAHGRRVIGGNLSLSAPSDFGRNLIGQWLDEFQAQHPA Sbjct: 61 DGERYLQHARNVLAEVNAGRDAVAHGRRVIGGNLSLSAPSDFGRNLIGQWLDEFQAQHPA 120 Query: 121 VSLQVHVSDRVADMYRQPVDVAIRYSAPDDSSLVALPLSPDNRRVLCASPDYLARHGRPR 180 VSLQVHVSDRVADMYRQPVDVAIRYSAPDDSSLVALPL+PDNRRVLCASPDYLARHGRPR Sbjct: 121 VSLQVHVSDRVADMYRQPVDVAIRYSAPDDSSLVALPLAPDNRRVLCASPDYLARHGRPR 180 Query: 181 SPADLRQHNCLRYVLSDTLHSQWNFFKDDEPVQVQVSGDRTCDDGELVRRWAVNGRGIAY 240 SPADLRQHNCLRYVLSDTLHSQWNFFKDDEPVQVQVSGDRTCDDGELVRRWAVNGRGIAY Sbjct: 181 SPADLRQHNCLRYVLSDTLHSQWNFFKDDEPVQVQVSGDRTCDDGELVRRWAVNGRGIAY 240 Query: 241 KSRLDVLADLRNGRLEALLEDYEGEPSPLHLVCTHRMCVSPTVRALRELLGERIARYLKD 300 KSRLDVLADLRNGRLEALLEDYEGEPSPLHLVCTHRMCVSPTVRALRELLGERIARYLKD Sbjct: 241 KSRLDVLADLRNGRLEALLEDYEGEPSPLHLVCTHRMCVSPTVRALRELLGERIARYLKD 300 Query: 301 R 301 R Sbjct: 301 R 301 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 180 bits (457), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 101/290 (34%), Positives = 166/290 (57%), Gaps = 2/290 (0%) Query: 1 MIRLEDLAIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP 60 M + + ++ F A GSLSAAAR + PA+ + LE LG +LL R+TR + LT Sbjct: 1 MDQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60 Query: 61 DGERYLQHARNVLAEVNAGRDAVAHGRRVIGGNLSLSAPSDFGRNLIGQWLDEFQAQHPA 120 +G +L+ + +LA++ AV+ G L +SAP+ FGR + L F A+H Sbjct: 61 EGAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLLPSFLAEHRD 120 Query: 121 VSLQVHVSDRVADMYRQPVDVAIRYSAPDDSSLVALPLSPDNRRVLCASPDYLARHGRPR 180 V+L ++++DR+AD+ + +DVAIR + DS+LV++ L+ +N RV+ A+P YL RHG P+ Sbjct: 121 VTLTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLA-ENHRVIVAAPAYLRRHGTPQ 179 Query: 181 SPADLRQHNCLRYVLSDTLHSQWNFFKDDEPVQVQVSGDRTCDDGELVRRWAVNGRGIAY 240 SP +L +HNCL + S+ W + + +V G+ C+DGE++ WA+ GRG+A+ Sbjct: 180 SPDELMRHNCL-AMSSEGSQRGWTLRQSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAW 238 Query: 241 KSRLDVLADLRNGRLEALLEDYEGEPSPLHLVCTHRMCVSPTVRALRELL 290 +S +V A + G L +L+ + ++ V R + +RA + L Sbjct: 239 RSMWEVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFL 288 >gi|300310802|ref|YP_003774894.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 157 bits (397), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 92/262 (35%), Positives = 138/262 (52%), Gaps = 1/262 (0%) Query: 4 LEDLAIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTPDGE 63 LEDL +F A + S + +AR+ +PA S + LE LG RL R+TRS+ +T +G Sbjct: 7 LEDLRLFCVVARHSSFAGSAREVGASPAYISKRIALLEQALGVRLFHRTTRSVVMTEEGG 66 Query: 64 RYLQHARNVLAEVNAGRDAVAHGRRVIGGNLSLSAPSDFGRNLIGQWLDEFQAQHPAVSL 123 + AR +L +V + V+ +RV G L +S GR ++ L F ++HP + + Sbjct: 67 NVHEWARRILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASEHPELKI 126 Query: 124 QVHVSDRVADMYRQPVDVAIRYSAPDDSSLVALPLSPDNRRVLCASPDYLARHGRPRSPA 183 Q+ + DR D+ + +D+ IR A + L + + P ++RVLCASP YL +HG P A Sbjct: 127 QLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILP-SQRVLCASPAYLKKHGLPADLA 185 Query: 184 DLRQHNCLRYVLSDTLHSQWNFFKDDEPVQVQVSGDRTCDDGELVRRWAVNGRGIAYKSR 243 LRQH CL + W V+VSG + GE++ +WAV+G GI +S Sbjct: 186 ALRQHQCLVIRERNQSFGIWRMMGPKGVETVKVSGMLASNHGEIIHQWAVDGHGIILRSA 245 Query: 244 LDVLADLRNGRLEALLEDYEGE 265 DV L+ GRL +L Y E Sbjct: 246 WDVADSLKRGRLVRVLPQYYQE 267 >gi|300311458|ref|YP_003775550.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 151 bits (381), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 93/295 (31%), Positives = 150/295 (50%), Gaps = 3/295 (1%) Query: 1 MIRLEDLAIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP 60 M RL+ + +F + GS AA D++ AVA+ + LE LG RLL RSTR L LT Sbjct: 1 MDRLQSMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTE 60 Query: 61 DGERYLQHARNVLAEVNAGRDAVAHGRRVIGGNLSLSAPSDFGRNLIGQWLDEFQAQHPA 120 G+ YL+ R +LAEV+ V+ + G L++ + FG++ +G+ L + +P Sbjct: 61 AGQAYLERVRMILAEVDDAEALVSLETKRPAGTLAIYCNAGFGQSQLGEMLSAYSQAYPE 120 Query: 121 VSLQVHVSDRVADMYRQPVDVAIRYSAPD-DSSLVALPLSPDNRRVLCASPDYLARHGRP 179 V+L + +S+R D+ + +D+ S D+S++ L R +LC SP Y+AR G P Sbjct: 121 VALDISLSERSIDLVEEGIDIGFFSSMQKFDASMIVRQLGV-ARVILCTSPAYIARQGAP 179 Query: 180 RSPADLRQHNCLRYVLSDTLHSQWNFFKDDEPVQVQVSGDRTCDDGELVRRWAVNGRGIA 239 P DL +HNCL + + L W+ + + V + + G L+R A+ G GI Sbjct: 180 EQPEDLSRHNCLNFS-HEYLRHHWHVNTNGGVLDVPIVSKVVSNSGVLLRDLALAGMGIV 238 Query: 240 YKSRLDVLADLRNGRLEALLEDYEGEPSPLHLVCTHRMCVSPTVRALRELLGERI 294 + + DLR+GRL +L ++ + +V R +S VR+ E + R Sbjct: 239 LRPSYSLGDDLRSGRLVQVLPGFDMGQVIMSMVYPSRRLLSAKVRSFAEFISARF 293 >gi|300312196|ref|YP_003776288.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 149 bits (376), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 103/300 (34%), Positives = 153/300 (51%), Gaps = 12/300 (4%) Query: 1 MIRLEDLAIFVCAADNGSLSAAARQHDVT----PAVASAAMKRLEGELGARLLARSTRSL 56 M +L+ + FV ++GS AA DVT PAV S + LE LG RLL R+TR L Sbjct: 1 MDKLQAMQTFVAVVESGSFVAAV---DVTGQSKPAV-SRQVSELEQFLGIRLLHRTTRRL 56 Query: 57 RLTPDGERYLQHARNVLAEVNAGRDAVAHGRRVIGGNLSLSAPSDFGRNLIGQWLDEFQA 116 LT +G Y + +L + V G L + AP DFG + +F Sbjct: 57 SLTDEGRVYFARCKELLETIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTE 116 Query: 117 QHPAVSLQVHVSDRVADMYRQPVDVAIRYSAPDDSSLVALPLSPDNRRVLCASPDYLARH 176 QHP ++L + +SDR D+ + D+AIR SA DS +VA PL+P R + CA+P++LARH Sbjct: 117 QHPLITLNITLSDRTIDLLEEGFDMAIRISALGDSRMVARPLAP-VRMIACAAPEFLARH 175 Query: 177 GRPRSPADLRQHNCLRYVLSDTLHSQWNF-FKDDEPVQVQVSGDRTCDDGELVRRWAVNG 235 G P +PA+LR + + Y W+F + QV+V ++G R A+ G Sbjct: 176 GTPGTPAELRDYPFISYSYRAG-GDDWSFRHVHGDTCQVRVRSTVYVNNGATCRAMAIAG 234 Query: 236 RGIAYKSRLDVLADLRNGRLEALLEDYE-GEPSPLHLVCTHRMCVSPTVRALRELLGERI 294 +GIA + V A ++ G+L L E + GE +H + R + P V+ +R+ L E+ Sbjct: 235 QGIAIQPDFIVNAAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLIEQF 294 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,004,770 Number of extensions: 43788 Number of successful extensions: 269 Number of sequences better than 1.0e-08: 53 Number of HSP's gapped: 215 Number of HSP's successfully gapped: 53 Length of query: 301 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 216 Effective length of database: 1,217,395 Effective search space: 262957320 Effective search space used: 262957320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)