BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0031.p (532 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis tra... 1077 0.0 gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra... 538 e-154 gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis tra... 455 e-129 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 366 e-102 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 358 e-100 >gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 532 Score = 1077 bits (2786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 530/532 (99%), Positives = 531/532 (99%) Query: 1 MNNLSLKKKLWLPLVFSWMALLFLSVWHAYQTRDLQIAERERGLQDVTEMAYTTIAGYAK 60 MNNLSLKKKLWLPLVFSWMALLFLSVWHAYQTRDLQIAERERGLQDVTEMAYTTIAGYAK Sbjct: 1 MNNLSLKKKLWLPLVFSWMALLFLSVWHAYQTRDLQIAERERGLQDVTEMAYTTIAGYAK 60 Query: 61 LESDGKLSREDAQKAAIARIRDQRYTGDGYVTLVDANSVIVMHPINSKLDGRNMLDFKDA 120 LESDGKLSREDAQKAAIARIRDQRYTGDGYVTLVDANSVIVMHPINSKLDGRNMLDFKDA Sbjct: 61 LESDGKLSREDAQKAAIARIRDQRYTGDGYVTLVDANSVIVMHPINSKLDGRNMLDFKDA 120 Query: 121 KGNELYKMIAATGSSGAGKGYLEYWWPRPGSDQPSPKMGFVKRFKPWNWDLICSVYSDDI 180 KGNELYKMIAATGSSGAGKGYLEYWWPRPGSDQPSPKMGFVKRFKPWNWDLICSVYSDDI Sbjct: 121 KGNELYKMIAATGSSGAGKGYLEYWWPRPGSDQPSPKMGFVKRFKPWNWDLICSVYSDDI 180 Query: 181 QADFRRALIQAVVVLIGLGVLLSLIAGMVSRNIFRSIGGEPGEAAEMARKIAAGDLTGVI 240 QADFRRALIQAVVVLIGLGVLLSLIAGMVSRNIFRSIGGEPGEAAEMARKIAAGDLTGVI Sbjct: 181 QADFRRALIQAVVVLIGLGVLLSLIAGMVSRNIFRSIGGEPGEAAEMARKIAAGDLTGVI 240 Query: 241 HTTQGDEHSLVAAVAYTRDRLVDTVHGIKQATESIKTSVDEIATGNMDLSNRTEQQAGSL 300 HTTQGDEHSLVAAVAYTRDRLVDTVHGIKQATESIKTSVDEIATGNMDLSNRTEQQAGSL Sbjct: 241 HTTQGDEHSLVAAVAYTRDRLVDTVHGIKQATESIKTSVDEIATGNMDLSNRTEQQAGSL 300 Query: 301 EETASTMEELTATVKQNAANAQHANQLASGAAQVAIQGGEVVGQVVQTMESINASSRKIV 360 EETASTMEELTATVKQNAANAQHANQLASGAAQVAIQGGEVVGQVVQTMESINASSRKIV Sbjct: 301 EETASTMEELTATVKQNAANAQHANQLASGAAQVAIQGGEVVGQVVQTMESINASSRKIV 360 Query: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLID 420 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLID Sbjct: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLID 420 Query: 421 DSVGKVDAGTHLVQRAGQTMQEVVSSIQGVSTVVSEIATASHEQSSGIEQVGEAITQMDE 480 DSVGKVDAGTHLVQRAGQTMQEVVSSIQGVSTVVSEIATASHEQSSGIEQVGEAITQMDE Sbjct: 421 DSVGKVDAGTHLVQRAGQTMQEVVSSIQGVSTVVSEIATASHEQSSGIEQVGEAITQMDE 480 Query: 481 TTQHNAALVEQAAAAAQSLQDQADKLVRLVGVFTLERGRSAPAVTSAQPLLQ 532 TTQ NAALVEQAAAAAQSLQDQADKLVRLVGVFTLERGR+APAVTSAQPLLQ Sbjct: 481 TTQQNAALVEQAAAAAQSLQDQADKLVRLVGVFTLERGRTAPAVTSAQPLLQ 532 >gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 538 bits (1386), Expect = e-154, Method: Compositional matrix adjust. Identities = 300/528 (56%), Positives = 379/528 (71%), Gaps = 1/528 (0%) Query: 1 MNNLSLKKKLWLPLVFSWMALLFLSVWHAYQTRDLQIAERERGLQDVTEMAYTTIAGYAK 60 M LS KKLWLPLV S +ALL +S++ A R++++ ER+ L ++ + A + + GY Sbjct: 1 MGQLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGA 60 Query: 61 LESDGKLSREDAQKAAIARIRDQRYTGDGYVTLVDANSVIVMHPINSKLDGRNMLDFKDA 120 L G LS+EDAQK A I+ RY DGY ++ + +IVMHPI ++LDG+++ +FKD Sbjct: 61 LADSGALSKEDAQKLAKQAIKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLSNFKDP 120 Query: 121 KGNELYKMIAATGSSGAGKGYLEYWWPRPGSDQPSPKMGFVKRFKPWNWDLICSVYSDDI 180 GN L+ I GS G G++ Y WP+ G+ +P PK FV +KPW+W+L Y DDI Sbjct: 121 AGNNLFVEITKAGSKPEG-GFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDI 179 Query: 181 QADFRRALIQAVVVLIGLGVLLSLIAGMVSRNIFRSIGGEPGEAAEMARKIAAGDLTGVI 240 A F R L Q ++ + L + +++ I R+IGG+P +AAE+A +IA GDLT I Sbjct: 180 NAAFLRTLWQMALLFAAVSAALVALVIVINHGILRTIGGDPAQAAEVANRIAQGDLTPNI 239 Query: 241 HTTQGDEHSLVAAVAYTRDRLVDTVHGIKQATESIKTSVDEIATGNMDLSNRTEQQAGSL 300 T GD SL+ AV RD L+ T+ IK + +I ++ EIA+GN+DLS RTEQQAGS+ Sbjct: 240 ETAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSI 299 Query: 301 EETASTMEELTATVKQNAANAQHANQLASGAAQVAIQGGEVVGQVVQTMESINASSRKIV 360 EETAS MEELTATVKQNA NA+ ANQLA A++VAIQGG VV QVVQTME I SSRKI Sbjct: 300 EETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIA 359 Query: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLID 420 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LID Sbjct: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLID 419 Query: 421 DSVGKVDAGTHLVQRAGQTMQEVVSSIQGVSTVVSEIATASHEQSSGIEQVGEAITQMDE 480 DSV KVD G+ LV++AG TM EVV+S++ V+ +V EI++AS EQS+GI +VG AITQMDE Sbjct: 420 DSVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDE 479 Query: 481 TTQHNAALVEQAAAAAQSLQDQADKLVRLVGVFTLERGRSAPAVTSAQ 528 TQ NAALVEQAAAAAQSLQDQA L LVG F ++ +++ A T+ Q Sbjct: 480 GTQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQASIAPTAPQ 527 >gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 455 bits (1171), Expect = e-129, Method: Compositional matrix adjust. Identities = 270/526 (51%), Positives = 356/526 (67%), Gaps = 5/526 (0%) Query: 5 SLKKKLWLPLVFSWMALLFLSVWHAYQTRDLQIAERERGLQDVTEMAYTTIAGYAKLESD 64 SLK +L LV W LL L+ W A+ R+ I ER+ GL+ V E A + Y + Sbjct: 3 SLKAQLLSALVVMWAGLLLLAAWSAFSARENMIDERKDGLRRVVEAANGVVKSYVADVAA 62 Query: 65 GKLSREDAQKAAIARIRDQRYTGDGYVTLVDANSVIVMHPINSKLDGRNMLDFKDAKGNE 124 G++S+E+AQK A+ RI RY GD Y+ + D+ V++M P N + G+N+ D KD++G Sbjct: 63 GRVSKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMVGKNVADRKDSEGKA 122 Query: 125 LYKMIAATGSSGAGKGYLEYWWPRPGSDQP--SPKMGFVKRFKPWNWDLICSVYSDDIQA 182 Y + G G+++Y PG+D +PKM +V + W+W ++ V+ D+QA Sbjct: 123 YYVEMMKVGQEKQ-HGFVQYMGRLPGTDDSNRTPKMSYVVHNQDWDWFIVTGVFLSDVQA 181 Query: 183 DFRRALIQAVVVLIGLGVLLSLIAGMVSRNIFRSIGGEPGEAAEMARKIAAGDLTGVIHT 242 FR L + + +L+ +GV++S++ + R I S+GGEP A ++A +IA GDLT + T Sbjct: 182 QFRADLFRLLGILLVVGVVVSVMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQT 241 Query: 243 TQGDEHSLVAAVAYTRDRLVDTVHGIKQATESIKTSVDEIATGNMDLSNRTEQQAGSLEE 302 GD SL+ A+A R+RL + GI+Q T++I EIA GN+DLS+RTE+QAGSL Sbjct: 242 RPGDTRSLLYAMATMRERLAGVIKGIRQGTDAIDIGAREIAAGNLDLSSRTEEQAGSLAT 301 Query: 303 TASTMEELTATVKQNAANAQHANQLASGAAQVAIQGGEVVGQVVQTMESINASSRKIVDI 362 TAS M+ LTATVKQNA NA+ A QLA A+ +A +GGEVVGQVVQTME I SSRKI DI Sbjct: 302 TASNMDGLTATVKQNADNARQAGQLAHSASDIATRGGEVVGQVVQTMEGITGSSRKIADI 361 Query: 363 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIDDS 422 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI+DS Sbjct: 362 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIEDS 421 Query: 423 VGKVDAGTHLVQRAGQTMQEVVSSIQGVSTVVSEIATASHEQSSGIEQVGEAITQMDETT 482 V +V +G+ V RAGQTM EVV++++ ++ +V EI+ AS EQ +GIEQV AI +MD+ T Sbjct: 422 VQRVGSGSDQVARAGQTMGEVVAAVRSLTDIVGEISAASEEQRNGIEQVNLAIGEMDQVT 481 Query: 483 QHNAALVEQAAAAAQSLQDQADKLVRLVGVFTL--ERGRSAPAVTS 526 Q NAALVEQAAAAA SL++QA +L V F + E SAP +S Sbjct: 482 QQNAALVEQAAAAAGSLEEQARRLKAAVSTFRVDGEENLSAPVASS 527 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 366 bits (939), Expect = e-102, Method: Compositional matrix adjust. Identities = 210/341 (61%), Positives = 258/341 (75%), Gaps = 13/341 (3%) Query: 204 LIAGMVSRNIFRSIGGEPGEAAEMARKIAAGDLTGVIHTTQGDEHSLVAAVAYTRDRLVD 263 LIA +++R + + +GGEP AA++A++IA GDLT + T GD SL+ A+ RD LV Sbjct: 201 LIAVLLTRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTKTGDNSSLLFAIKNMRDSLVS 260 Query: 264 TVHGIKQATESIKTSVDEIATGNMDLSNRTEQQAGSLEETASTMEELTATVKQNAANAQH 323 V ++Q T +I+ + EIA+GN+DLS+RTEQQA SLEETAS MEEL TVKQNA NA+ Sbjct: 261 IVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEELMTTVKQNADNAKQ 320 Query: 324 ANQLASGAAQVAIQGGEVVGQVVQTMESINASSRKIVDIISVIDGIAFQTNILALNAAVE 383 A+QLA A++VA QGGEVV QVV TM+ INASSRKIVDIISVIDGIAFQTNILALNAAVE Sbjct: 321 ASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIAFQTNILALNAAVE 380 Query: 384 AARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIDDSVGKVDAGTHLVQRAGQTMQEV 443 AARAGEQGRGFAVVASEVRSLAQRSA AAKEI +LI+DSV +++ G+ LV++AGQTM+ V Sbjct: 381 AARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGSSLVEQAGQTMENV 440 Query: 444 VSSIQGVSTVVSEIATASHEQSSGIEQVGEAITQMDETTQHNAALVEQAAAAAQSLQDQA 503 V+S++ V+ VV+EI+ AS EQS GI QV AIT MDE TQ N+ALVE+AAAAA S+++QA Sbjct: 441 VNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVEEAAAAANSMKEQA 500 Query: 504 DKLVRLVGVFTLERGR---------SAPA----VTSAQPLL 531 L LV F L+ + SAPA VT PLL Sbjct: 501 GALSGLVATFRLDAQQARQSGYSQASAPAHAHHVTGNLPLL 541 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 358 bits (920), Expect = e-100, Method: Compositional matrix adjust. Identities = 204/326 (62%), Positives = 261/326 (80%), Gaps = 1/326 (0%) Query: 192 VVVLIGLGVLLSLIAGM-VSRNIFRSIGGEPGEAAEMARKIAAGDLTGVIHTTQGDEHSL 250 ++++ +GV+ +++A ++R++ R +GGEP A ++A +IA GDL VI T GD SL Sbjct: 196 MLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGDLAVVIDTRAGDHDSL 255 Query: 251 VAAVAYTRDRLVDTVHGIKQATESIKTSVDEIATGNMDLSNRTEQQAGSLEETASTMEEL 310 +AA+ RD+L V +++ +E+I T+ EIA GN+DLS RTEQQAG+LEETAS+ME+L Sbjct: 256 MAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRTEQQAGALEETASSMEQL 315 Query: 311 TATVKQNAANAQHANQLASGAAQVAIQGGEVVGQVVQTMESINASSRKIVDIISVIDGIA 370 +TVKQNA NA AN LA A+ VA+QGG +V QVVQTM+SINASS+K+ DI+SVIDGIA Sbjct: 316 NSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQTMQSINASSQKVADIVSVIDGIA 375 Query: 371 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIDDSVGKVDAGT 430 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LI DSVGKV+ G+ Sbjct: 376 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGS 435 Query: 431 HLVQRAGQTMQEVVSSIQGVSTVVSEIATASHEQSSGIEQVGEAITQMDETTQHNAALVE 490 LV++AG TM ++V+SI+ V+ V++EI A+ EQSSGIEQV EAI Q+D+ TQ NAALVE Sbjct: 436 KLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAIIQIDDMTQQNAALVE 495 Query: 491 QAAAAAQSLQDQADKLVRLVGVFTLE 516 QAAAAA+SLQ+QA L +LV VF L+ Sbjct: 496 QAAAAARSLQEQAAGLQQLVSVFRLD 521 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.128 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,258,066 Number of extensions: 44715 Number of successful extensions: 490 Number of sequences better than 1.0e-08: 71 Number of HSP's gapped: 276 Number of HSP's successfully gapped: 72 Length of query: 532 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 442 Effective length of database: 1,193,720 Effective search space: 527624240 Effective search space used: 527624240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)