BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0027.p (918 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313070|ref|YP_003777162.1| two component sensor histidine ... 1834 0.0 gi|300310697|ref|YP_003774789.1| two component hybrid sensor his... 106 8e-24 gi|300311808|ref|YP_003775900.1| two component sensor histidine ... 103 5e-23 gi|300313895|ref|YP_003777987.1| two-component system sensor his... 102 2e-22 gi|300311810|ref|YP_003775902.1| two component sensor histidine ... 99 1e-21 >gi|300313070|ref|YP_003777162.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 939 Score = 1834 bits (4751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 914/918 (99%), Positives = 914/918 (99%) Query: 1 MTTRPDPDDLLERVMRDEERQARGRLKIFFGFSAGVGKTFAMLEAAQALAAQGGDVVAGV 60 MTTRPDPDDLLERVMRDEERQARGRLKIFFGFSAGVGKTFAMLEAAQALAAQGGDVVAGV Sbjct: 22 MTTRPDPDDLLERVMRDEERQARGRLKIFFGFSAGVGKTFAMLEAAQALAAQGGDVVAGV 81 Query: 61 VETHGRAETEAQLAGLARLPMRMVAYRDRQLPEFDLDAALERKPGVILVDELAHSNVPGS 120 VETHGRAETEAQLAGLARLPMRMVAYRDRQLPEFDLDAALERKPGVILVDELAHSNVPGS Sbjct: 82 VETHGRAETEAQLAGLARLPMRMVAYRDRQLPEFDLDAALERKPGVILVDELAHSNVPGS 141 Query: 121 RHAKRWQDIDELLRAGIDVYTTLNVQHIESLNDVVGQITGIRVFETVPDHVFDEADDVML 180 RHAKRWQDIDELLRAGIDVYTTLNVQHIESLNDVVGQITGIRVFETVPDHVFDEADDVML Sbjct: 142 RHAKRWQDIDELLRAGIDVYTTLNVQHIESLNDVVGQITGIRVFETVPDHVFDEADDVML 201 Query: 181 VDIPPDELLARLQQGKVYLPQQAEKAGRNFFRKGNLIALREIALRRTADRVDADMRQYRA 240 VDIPPDELLARLQQGKVYLPQQAEKAGRNFFRKGNLIALREIALRRTADRVDADMRQYRA Sbjct: 202 VDIPPDELLARLQQGKVYLPQQAEKAGRNFFRKGNLIALREIALRRTADRVDADMRQYRA 261 Query: 241 DRSIAQLWQARERIVVAIGSGSGEERLIREAARLAAKLQAQWLAVHVDLPGQRQAMEARE 300 DRSIAQLWQARE IVVAIGSGSGEERLIREAARLAAKLQAQWLAVHVDLPGQRQAMEARE Sbjct: 262 DRSIAQLWQARECIVVAIGSGSGEERLIREAARLAAKLQAQWLAVHVDLPGQRQAMEARE 321 Query: 301 RVVSYLKLAHSLGAETASISGEELAAALLQFARSRNAGKLVIGQEEGGLRRLLRWPRGTL 360 RVVSYLKLAHSLGAETASISGEELAAALLQFARSRNAGKLVIGQEEGGLRRLLRWPRGTL Sbjct: 322 RVVSYLKLAHSLGAETASISGEELAAALLQFARSRNAGKLVIGQEEGGLRRLLRWPRGTL 381 Query: 361 TQRIARSGGEIDLYTIARSRTRHQHEPASPDSAASAAEALLTRRRRTRGTLWAVASCAIT 420 QRIARSGGEIDLYTIARSRTRHQHEPASPDSAASAAEALLTRRRRTRGTLWAVASCAIT Sbjct: 382 AQRIARSGGEIDLYTIARSRTRHQHEPASPDSAASAAEALLTRRRRTRGTLWAVASCAIT 441 Query: 421 TTLAFLLDGKLHPANVIMLYLVGVMLVAMRYGRAASALVSVLSVLSFDFFFVDPRFSITV 480 TTLAFLLDGKLHPANVIMLYLVGVMLVAMRYGRAASALVSVLSVLSFDFFFVDPRFSITV Sbjct: 442 TTLAFLLDGKLHPANVIMLYLVGVMLVAMRYGRAASALVSVLSVLSFDFFFVDPRFSITV 501 Query: 481 SDAQYLLTLAVMLAVSLFISSLTARLRRQASVAMQREARAANLYMLGKELSALLTLDQIL 540 SDAQYLLTLAVMLAVSLFISSL ARLRRQASVAMQREARAANLYMLGKELSALLTLDQIL Sbjct: 502 SDAQYLLTLAVMLAVSLFISSLAARLRRQASVAMQREARAANLYMLGKELSALLTLDQIL 561 Query: 541 EIGRRHLAAVFGARIAFFLPDSADQLRLAEPEQDSGAAHVFRNVDAGVAQWVYDNGQAAG 600 EIGRRHLAAVFGARIAFFLPDSADQLRLAEPEQDSGAAHVFRNVDAGVAQWVYDNGQAAG Sbjct: 562 EIGRRHLAAVFGARIAFFLPDSADQLRLAEPEQDSGAAHVFRNVDAGVAQWVYDNGQAAG 621 Query: 601 KGTATLPSAAALYLPLTATMRTRGVLAFAIEAPSEEERQLAAAQLALPENRQMLEIFCSQ 660 KGTATLPSAAALYLPLTATMRTRGVLAFAIEAPSEEERQLAAAQLALPENRQMLEIFCSQ Sbjct: 622 KGTATLPSAAALYLPLTATMRTRGVLAFAIEAPSEEERQLAAAQLALPENRQMLEIFCSQ 681 Query: 661 IAMAIERLHYAEVAQDALVTMESERLRNSLLSAISHDLRTPLTSLVGSADVLAANARLDD 720 IAMAIERLHYAEVAQDALVTMESERLRNSLLSAISHDLRTPLTSLVGSADVLAANARLDD Sbjct: 682 IAMAIERLHYAEVAQDALVTMESERLRNSLLSAISHDLRTPLTSLVGSADVLAANARLDD 741 Query: 721 DARAMARTISEQSQKMVGLMNNLLDMARLQAGVVTLNRQWNALEELAGSALRLLAKALEG 780 DARAMARTISEQSQKMVGLMNNLLDMARLQAGVVTLNRQWNALEELAGSALRLLAKALEG Sbjct: 742 DARAMARTISEQSQKMVGLMNNLLDMARLQAGVVTLNRQWNALEELAGSALRLLAKALEG 801 Query: 781 RQVDTRIAPELPLLRVDAVLLERVLANLVENAIKYSPPGTPIGISAHVEHGDGAPQVKVC 840 RQVDTRIAPELPLLRVDAVLLERVLANLVENAIKYSPPGTPIGISAHVEHGDGAPQVKVC Sbjct: 802 RQVDTRIAPELPLLRVDAVLLERVLANLVENAIKYSPPGTPIGISAHVEHGDGAPQVKVC 861 Query: 841 VTDQGRGFPPTMTQHAFEKFTRGDNESATPGVGLGLAICRAIIEAHQGRIWIAPQEAGQG 900 V DQGRGFPPTMTQHAFEKFTRGDNESATPGVGLGLAICRAIIEAHQGRIWIAPQEAGQG Sbjct: 862 VMDQGRGFPPTMTQHAFEKFTRGDNESATPGVGLGLAICRAIIEAHQGRIWIAPQEAGQG 921 Query: 901 ATVCFTLPVETQPAPPEE 918 ATVCFTLPVETQPAPPEE Sbjct: 922 ATVCFTLPVETQPAPPEE 939 >gi|300310697|ref|YP_003774789.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 916 Score = 106 bits (265), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 81/238 (34%), Positives = 122/238 (51%), Gaps = 18/238 (7%) Query: 682 ESERLRNSLLSAISHDLRTPLTSLVGSADVLAANARLDDDARAMARTISEQSQKMVGLMN 741 E+ ++ L+ ISHDLRTPLTS++G AD++ A+ R I ++ M+ ++N Sbjct: 446 EANLAKSGFLTRISHDLRTPLTSILGFADMIQASG---GPHAGHGRIIMRSARHMLTMVN 502 Query: 742 NLLDMAR---LQAGVVTLNRQWNALEELAGSALRLLAKALEGRQVDTRIAPELP-LLRVD 797 +L+D AR L T L+E+A L + +D I+P+LP +L +D Sbjct: 503 DLIDYARGDPLDTPQPTPLYLHALLQEIAQEGQVLAQRQHNHFTLD--ISPDLPPVLALD 560 Query: 798 AVLLERVLANLVENAIKYSPPGTPIGISA-----HVEHGDGAPQVKVCVTDQGRGFPPTM 852 A L R+L NL++NA KY+ G IG+ H + G GA Q++V +D G G P Sbjct: 561 ARRLHRILGNLLDNAAKYTREGR-IGLHVQWQADHADAGKGALQIEV--SDTGCGIAPQF 617 Query: 853 TQHAFEKFTRGDNESATPGVGLGLAICRAIIEAHQGRIWIAPQEAGQGATVCFTLPVE 910 FE F R D + PG+G+GLAI R ++ G I + + G G + LP E Sbjct: 618 QSRIFEPFERADADRRQPGIGMGLAIVRLWVQRMGGSI-VLESQPGMGTRMHLQLPAE 674 >gi|300311808|ref|YP_003775900.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 289 Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 85/272 (31%), Positives = 135/272 (49%), Gaps = 21/272 (7%) Query: 647 LPENRQMLEIFCSQIAMAIERLHYAEVAQDALVTMESERLRNSLLSAISHDLRTPLTSLV 706 LP+ L+ +A +E A D++ RL++ L+ +SH+LRTPL ++V Sbjct: 15 LPKTSDYLDHLPEAVARVLETQRAARRQADSVT-----RLKDEFLATLSHELRTPLNAIV 69 Query: 707 GSADVLAANARLDDDARAMARTISEQSQKMVGLM-NNLLDMARLQAGVVTLNRQWNALEE 765 G L N D D + E++ ++ M +LLDM+R+ AG + L + L Sbjct: 70 GWTQYLL-NDHSDADRLVKGLQVIERNARLQAQMVEDLLDMSRMLAGKLRLETRPMDLAS 128 Query: 766 LAGSALRLLAKALEGRQVDTRIAPELP---LLRVDAVLLERVLANLVENAIKYSPPGTPI 822 +A A+ + A E RQ++ + P L ++ D L++V+ NL+ NAIK++P + Sbjct: 129 VAEEAIAAVRPAAEARQIE--LHPALGQGGVILGDPARLQQVVWNLLMNAIKFTPRQGRV 186 Query: 823 GISAHVEHGDGAPQVKVCVTDQGRGFPPTMTQHAFEKFTR-----GDNESATPGVGLGLA 877 +S +H D V + V+D GRG F++FT+ G S G+GLGLA Sbjct: 187 SLSLR-QHDD---TVALEVSDNGRGIKGEFLGSVFDRFTQEDVSTGSTGSTASGLGLGLA 242 Query: 878 ICRAIIEAHQGRIWIAPQEAGQGATVCFTLPV 909 I R ++E H G+I A G GA TLP+ Sbjct: 243 IARHLVELHGGQIRAASAGPGMGAAFTVTLPL 274 >gi|300313895|ref|YP_003777987.1| two-component system sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 128/261 (49%), Gaps = 29/261 (11%) Query: 653 MLEIFCSQIAMAIERLHYAEVAQDALVTMESERLRNSLLSAISHDLRTPLTSLVGSADVL 712 ML +Q+AM +ER +E+LR ++ +SH+LRTPL L G + L Sbjct: 229 MLAQDFNQLAMTLER---------------NEKLRREFMADVSHELRTPLAILNGQLEAL 273 Query: 713 AANARLDDDARAMARTISEQSQKMVGLMNNLLDMARLQAGVVTLNRQWNALEELAGSALR 772 + L DA+ + R++ + + + L+ +L D++ AG +T R L L + Sbjct: 274 E-DGVLQPDAQTL-RSLKSEVEHLNKLVGDLYDLSLADAGALTYRRADIDLAPLLRDSAA 331 Query: 773 LLAKALEGRQVDTRIAPELPL---LRVDAVLLERVLANLVENAIKYSPPGTPIGISAHVE 829 L + R + R++ ELP + DA L+++L+NL EN+++Y+ G + + AH++ Sbjct: 332 LYSDRFSQRGM--RLSCELPASMPVHGDAARLQQLLSNLFENSLRYTDAGGRLQVHAHLQ 389 Query: 830 HGDGAPQVKVCVTDQGRGFPPTMTQHAFEKFTR--GDNESATPGVGLGLAICRAIIEAHQ 887 + D G PP + FE+F R A+ G GLGLAICR I++AHQ Sbjct: 390 Q----QHWHLVFDDSEPGVPPEVMARLFERFFRVEASRNRASGGAGLGLAICRRIVDAHQ 445 Query: 888 GRIWIAPQEAGQGATVCFTLP 908 G I + G G V LP Sbjct: 446 GTIGASASPLG-GLRVVVVLP 465 >gi|300311810|ref|YP_003775902.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 535 Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 120/253 (47%), Gaps = 32/253 (12%) Query: 690 LLSAISHDLRTPLTSLVG--------SADVLAA----------NARLD----DDARAMAR 727 + ++SHDLR+PL +L G + D+L A A+L DD + R Sbjct: 287 FIYSVSHDLRSPLVNLQGFSKEIGHATTDLLNAVQALPVPDADKAKLRSVVADDIQPALR 346 Query: 728 TISEQSQKMVGLMNNLLDMARLQAGVVTLNRQWNALEELAGSALRLLAKALEGRQVDTRI 787 I + G+++++L ++R AG V + +A + ++ ++ + + Sbjct: 347 FIQNAVTRSAGIIDSMLRLSR--AGRVEYQPVMLDMNVIAQRIVAAMSGSIRDKGAVVEV 404 Query: 788 APELPLLRVDAVLLERVLANLVENAIKYSPPGTP--IGISAHVEHGDGA--PQVKVCVT- 842 APELP D +E+VL NLV NA+ Y P P I I E G A P+ V V Sbjct: 405 APELPPAFGDPTAIEQVLGNLVGNAVNYLDPARPGRITIDHLREEGGAATGPETNVYVVR 464 Query: 843 DQGRGFPPTMTQHAFEKFTRGDNESATPGVGLGLAICRAIIEAHQGRIWIAPQEAGQGAT 902 D G G PP F F R + +A PG G+GLA+ + ++E H GRIW+ E GQG++ Sbjct: 465 DNGLGIPPAYMHKMFIAFQRL-HGNAAPGEGIGLALVKRVVERHGGRIWVESTE-GQGSS 522 Query: 903 VCFTLPVETQPAP 915 LP PAP Sbjct: 523 FYVALPARP-PAP 534 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,508,957 Number of extensions: 100254 Number of successful extensions: 546 Number of sequences better than 1.0e-08: 42 Number of HSP's gapped: 456 Number of HSP's successfully gapped: 42 Length of query: 918 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 824 Effective length of database: 1,174,780 Effective search space: 968018720 Effective search space used: 968018720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 135 (56.6 bits)