BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0017.p
         (343 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313078|ref|YP_003777170.1| NADP-dependent oxidoreductase [...   699   0.0  
gi|300311093|ref|YP_003775185.1| NADPH:quinone oxidoreductase [H...    69   5e-13

>gi|300313078|ref|YP_003777170.1| NADP-dependent oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/343 (99%), Positives = 342/343 (99%)

Query: 1   MTKTTAQTNRRIVLASRPTGAPTADNFRLEEVAIPALEEGQLLLRGQWLSLDPYMRGRMS 60
           MTKTT QTNRRIVLASRPTGAPTADNFRLEEVA+PALEEGQLLLRGQWLSLDPYMRGRMS
Sbjct: 1   MTKTTPQTNRRIVLASRPTGAPTADNFRLEEVAVPALEEGQLLLRGQWLSLDPYMRGRMS 60

Query: 61  DAPSYAPPVEIGGVMTGGVVSRVEASRHPEFKEGDLVMAYTGWQEYAVSDGTGVNKLPAG 120
           DAPSYAPPVEIGGVMTGGVVSRVEASRHPEFKEGDLVMAYTGWQEYAVSDGTGVNKLPAG
Sbjct: 61  DAPSYAPPVEIGGVMTGGVVSRVEASRHPEFKEGDLVMAYTGWQEYAVSDGTGVNKLPAG 120

Query: 121 FAHPSHALGVLGMPGYTAYAGLIDIGQPRPGETVVVAAATGAVGSLVGQIAKLRGCHVVG 180
           FAHPSHALGVLGMPGYTAYAGLIDIGQPRPGETVVVAAATGAVGSLVGQIAKLRGCHVVG
Sbjct: 121 FAHPSHALGVLGMPGYTAYAGLIDIGQPRPGETVVVAAATGAVGSLVGQIAKLRGCHVVG 180

Query: 181 IAGGAQKCEAAVKELGFDACIDHRAADFPEQLKAACPRGIDVYFENVGGAVLDAVFPLLN 240
           IAGGAQKCEAAVKELGFDACIDHRAADFPEQLKAACPRGIDVYFENVGGAVLDAVFPLLN
Sbjct: 181 IAGGAQKCEAAVKELGFDACIDHRAADFPEQLKAACPRGIDVYFENVGGAVLDAVFPLLN 240

Query: 241 IHARVPVCGLIAHYNGGTLATDSAAILRRTLTQRMRVQGFIIFDYYVNRPDLHAAFQQEV 300
           IHARVPVCGLIAHYNGGTLATDSAAILRRTLTQRMRVQGFIIFDYYVNRPDLHAAFQQEV
Sbjct: 241 IHARVPVCGLIAHYNGGTLATDSAAILRRTLTQRMRVQGFIIFDYYVNRPDLHAAFQQEV 300

Query: 301 GNWLKQGKLHYREDVVQGLENAPEAFMGLLQGKNFGKLVVKLD 343
           GNWLKQGKLHYREDVVQGLENAPEAFMGLLQGKNFGKLVVKLD
Sbjct: 301 GNWLKQGKLHYREDVVQGLENAPEAFMGLLQGKNFGKLVVKLD 343


>gi|300311093|ref|YP_003775185.1| NADPH:quinone oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 325

 Score = 68.9 bits (167), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 144/329 (43%), Gaps = 39/329 (11%)

Query: 31  EVAIPALEEGQLLLRGQWLSLD-PYMRGRMSDAP-----SYAPPVEIGGVMTGGVVSRVE 84
           E  +P L+ G++L++     ++ P +  R  + P     S  P +E+ G +  G +    
Sbjct: 19  ERPVPELKAGEVLIKVHAAGVNRPDVFQRTGNYPVPPGASDLPGLEVAGEIVAGDLG--- 75

Query: 85  ASRHPEFKEGDLVMAYT---GWQEYAVSDGTGVNKLPAGFAHPSHALGVLGMPG--YTAY 139
                 FK GDLV A     G+ E+  +       +P G +    AL    +P   +T +
Sbjct: 76  ---DSGFKLGDLVCALVQGGGYAEFCAAPLAQCLPVPKGLS----ALEAAALPENYFTVW 128

Query: 140 AGLIDIGQPRPGETVVVAAATGAVGSLVGQIAKLRGCHVVGIAGGAQKCEAAVKELGFDA 199
           + + D GQ    ET++V   +  +G    QIA+  G  V   AG A+KC A  +ELG + 
Sbjct: 129 SNVFDRGQLSGEETLLVQGGSSGIGVTAIQIARALGHRVFATAGSAEKCRAC-EELGAER 187

Query: 200 CIDHRAADFPEQLKAAC-PRGIDVYFENVGGAVLDAVFPLLNIHARVPVCGLIAHYNGGT 258
            I+++  DF   +K     RG+DV  + VGG  L      L    R+     IA   G  
Sbjct: 188 AINYKTEDFEAVVKELTGGRGVDVILDMVGGDYLPREIKALADDGRLV---FIAQLGGAK 244

Query: 259 LATDSAAILRRTLTQRMRVQGFIIFDYYVN-RPDLHAAFQQEVGNWLKQGK----LHYRE 313
              D   ++RR LT    + G  +    V  +  + A  ++ V   ++ GK    +H+R 
Sbjct: 245 GQLDMGQVMRRRLT----ITGSTLRPRPVAFKAAIAAKLREHVWPLIEAGKIRPVIHHRF 300

Query: 314 DVVQGLENAPEAFMGLLQGKNFGKLVVKL 342
                LE A +A   +    + GK++++L
Sbjct: 301 P----LEQAAQAHAMMEGSTHIGKIMLEL 325


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,182,264
Number of extensions: 52535
Number of successful extensions: 171
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,212,660
Effective search space: 311653620
Effective search space used: 311653620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)