BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0015.p
         (403 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313080|ref|YP_003777172.1| major facilitator superfamily p...   741   0.0  

>gi|300313080|ref|YP_003777172.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/403 (98%), Positives = 399/403 (99%)

Query: 1   MQAAAPVLPRPSPSPSPHRWKVLAAGVAANASFSAVFSGIPVTSVVLRSDYRLSNTQLGL 60
           MQAAAPVLPRPSPSPSPHRWKVLAAGVAANASFSAVFSGIPVTSVVLRSDYRLSNTQLGL
Sbjct: 1   MQAAAPVLPRPSPSPSPHRWKVLAAGVAANASFSAVFSGIPVTSVVLRSDYRLSNTQLGL 60

Query: 61  ALGLLSLGVALGELPWGVLTDRWGDRKVLLAGLLGASAALGLLMLYALPGQGAANFAWLC 120
           ALGLLSLGVALGELPWGVLTDRWGDRKVLLAGLLGASAALGLLMLYALPGQGAA+FAWLC
Sbjct: 61  ALGLLSLGVALGELPWGVLTDRWGDRKVLLAGLLGASAALGLLMLYALPGQGAASFAWLC 120

Query: 121 AGLMLAGLLGGSVNGASGRAIMGWFGEGERGLAMSIRQTAVPLGGGLGALLLPTLAAQAG 180
           AGLMLAGLLGGSVNGASGRAIMGWFGEGERGLAMSIRQTAVPLGGGLGALLLPTLAAQAG
Sbjct: 121 AGLMLAGLLGGSVNGASGRAIMGWFGEGERGLAMSIRQTAVPLGGGLGALLLPTLAAQAG 180

Query: 181 FGAVFAALMAACLASVGLVLRWLREAPVALAHGAAPVVGAASMALRSKLVWRLALGIGLL 240
           FGAVFAALMAACLASVGLVLRWLREAPVA AHGAAPVVGAASMALRSKLVWRLALGIGLL
Sbjct: 181 FGAVFAALMAACLASVGLVLRWLREAPVAPAHGAAPVVGAASMALRSKLVWRLALGIGLL 240

Query: 241 CAPQVALLSFGGIFLQESAQASVLAISVLLTLVQLGAAAAFIASGRWTDRRGQRRDYLRG 300
           CAPQVALLSFGGIFLQESAQASVLAISVLLTLVQLGAAAA IASGRWTDRRGQRRDYLRG
Sbjct: 241 CAPQVALLSFGGIFLQESAQASVLAISVLLTLVQLGAAAARIASGRWTDRRGQRRDYLRG 300

Query: 301 CALASAALFGLLGVLAPLLVAAGVVVSAWHGVAYTELAVVAGAGQVGTALGLGNSCVFLV 360
           CALASAALFGLLGVLAPLLVAAGVVVSAWHGVAYTELAVVAGAGQVGTALGLGNSCVFLV
Sbjct: 301 CALASAALFGLLGVLAPLLVAAGVVVSAWHGVAYTELAVVAGAGQVGTALGLGNSCVFLV 360

Query: 361 FFLAAQAIPPLLHWQGWPAVWLATALVALLVWPLFPPVDRARH 403
           FFLAAQAIPPLLHWQGWPAVWLA A+VALLVWPLFPP DRARH
Sbjct: 361 FFLAAQAIPPLLHWQGWPAVWLAIAVVALLVWPLFPPEDRARH 403


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 708,848
Number of extensions: 19986
Number of successful extensions: 210
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 5
Length of query: 403
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 316
Effective length of database: 1,207,925
Effective search space: 381704300
Effective search space used: 381704300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)