BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0014.p (331 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313081|ref|YP_003777173.1| transcription regulator protein... 617 e-178 gi|300313912|ref|YP_003778004.1| AraC family transcription regul... 263 2e-71 gi|300311850|ref|YP_003775942.1| AraC family transcription regul... 224 1e-59 gi|300312798|ref|YP_003776890.1| AraC family transcription regul... 179 2e-46 gi|300311694|ref|YP_003775786.1| AraC family transcription regul... 134 7e-33 >gi|300313081|ref|YP_003777173.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 330 Score = 617 bits (1591), Expect = e-178, Method: Compositional matrix adjust. Identities = 322/331 (97%), Positives = 323/331 (97%), Gaps = 1/331 (0%) Query: 1 MPLRETAFLIFADCSMLDFTGPLSAFDAANRLAGKTLYRLTLYSEPGGMIRSSAGALIHT 60 MPLRETAFLIFADCSMLDFTGPLSAFDAANRLAGKTLYRLTLYSEPGGMIRSSAGALIHT Sbjct: 1 MPLRETAFLIFADCSMLDFTGPLSAFDAANRLAGKTLYRLTLYSEPGGMIRSSAGALIHT 60 Query: 61 ERIGRTSFDTLIVAGGGAPREGLVSPALTTTPPPAGAPRTRRIAGICTGAFVLAATGLLD 120 ERIGRTSFDTLIVAGGGAPREGLVSPAL A A R+RRIAGICTGAFVLAATGLLD Sbjct: 61 ERIGRTSFDTLIVAGGGAPREGLVSPALRRHVLRA-AARSRRIAGICTGAFVLAATGLLD 119 Query: 121 GKRATTHWRMAAKLQQMHPAVKVDSDRIYSRDGAVWTSAGISAGIDLALALIEDDHGVEL 180 GKRATTHWRMAAKLQQMHPAVKVDSDRIYSRDGAVWTSAGISAGIDLALALIEDDHGVEL Sbjct: 120 GKRATTHWRMAAKLQQMHPAVKVDSDRIYSRDGAVWTSAGISAGIDLALALIEDDHGVEL 179 Query: 181 ARSVARELVVYHRRPGGQSQFSALQEMDGGSERIRRALGFAREHLHQALTVDLLAEVACL 240 ARSVARELVVYHRRPGGQSQFSALQEMDGGSERIRRALGFAREHLHQALTVDLLAEVACL Sbjct: 180 ARSVARELVVYHRRPGGQSQFSALQEMDGGSERIRRALGFAREHLHQALTVDLLAEVACL 239 Query: 241 SRRQFDRAFAAETGQTPARAIEQMRAEAARLRIEQSQDTLESIARATGFGDADRMRRACL 300 SRRQFDRAFAAETGQTPARAIEQMRAEAARLRIEQSQDTLESIARATGFGDADRMRRACL Sbjct: 240 SRRQFDRAFAAETGQTPARAIEQMRAEAARLRIEQSQDTLESIARATGFGDADRMRRACL 299 Query: 301 RLFGQPPQAMRRLARAEDDQDRLSAPSGVHA 331 RLFGQPPQAMRRLARAEDDQDRLSAPSGVHA Sbjct: 300 RLFGQPPQAMRRLARAEDDQDRLSAPSGVHA 330 >gi|300313912|ref|YP_003778004.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 263 bits (671), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 153/294 (52%), Positives = 193/294 (65%), Gaps = 2/294 (0%) Query: 24 SAFDAANRLAGKTLYRLTLYSEPGGMIRSSAGALIHTERIGRT-SFDTLIVAGGGAPREG 82 + F+ AN++AG YRL YS GG + SS G + T + T S DT +V G G P E Sbjct: 21 AVFEYANKVAGHEFYRLHNYSVGGGELASSLGMRVTTAKAAATASIDTWVVCGVGNPLES 80 Query: 83 LVSPALTTTPPPAGAPRTRRIAGICTGAFVLAATGLLDGKRATTHWRMAAKLQQMHPAVK 142 S A A + RRIAGICTG FVLA GLL +RATTHW A +Q+ P ++ Sbjct: 81 PASAEECAFLQRA-AKKARRIAGICTGGFVLAEAGLLARRRATTHWAFARAMQERFPDIQ 139 Query: 143 VDSDRIYSRDGAVWTSAGISAGIDLALALIEDDHGVELARSVARELVVYHRRPGGQSQFS 202 V+ DRIY DG +WTSAG++AG+DLALA++ D G E ARSVAR+LV++ R GGQSQ S Sbjct: 140 VEDDRIYIVDGPLWTSAGMTAGLDLALAMVGKDLGEEAARSVARKLVMHQHRAGGQSQHS 199 Query: 203 ALQEMDGGSERIRRALGFAREHLHQALTVDLLAEVACLSRRQFDRAFAAETGQTPARAIE 262 + E+ ++RI+ AL +AR +L +ALTV+ LAE A LS RQF R F +ETGQ+PA+AIE Sbjct: 200 EMLELAPKTDRIQDALNYARRNLKRALTVEELAEQANLSARQFTRVFTSETGQSPAKAIE 259 Query: 263 QMRAEAARLRIEQSQDTLESIARATGFGDADRMRRACLRLFGQPPQAMRRLARA 316 +R EAARL IEQS+ LE +AR TGF D MR LR FG PQ+MRR RA Sbjct: 260 GLRLEAARLMIEQSRHPLEVVARETGFRDRRHMREVFLRGFGVAPQSMRREGRA 313 >gi|300311850|ref|YP_003775942.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 343 Score = 224 bits (570), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 135/319 (42%), Positives = 182/319 (57%), Gaps = 10/319 (3%) Query: 2 PLRETAFLIFADCSMLDFTGPLSAFDAANRLAGKTLYRLTLYSEPGGMIRSSAGALIHTE 61 P R FL +A ++LD +GP+ NRL G+ +YRL + S GG I +SAG + T+ Sbjct: 6 PPRRVVFLAYAGMNLLDLSGPMQVLATTNRLQGREVYRLHVVSAQGGTILTSAGLPVGTQ 65 Query: 62 RIGRTS--------FDTLIVAGGGAPREGLVSPALTTTPPPAGAPRTRRIAGICTGAFVL 113 + TLI GG + + + AL A RI +CTGAF L Sbjct: 66 SLQEMDRLLQATPDLHTLISPGGSSGDQFPLDAALVAWIR-QHAQAAVRICSVCTGAFHL 124 Query: 114 AATGLLDGKRATTHWRMAAKLQQMHPAVKVDSDRIYSRDGAVWTSAGISAGIDLALALIE 173 A G+LDG R TTHW A +LQ+ +PA++VD+D IY R G +WTSAG++AGIDLALAL+E Sbjct: 125 AEAGVLDGLRVTTHWDWAQELQRRYPALQVDADPIYIRQGRIWTSAGVTAGIDLALALVE 184 Query: 174 DDHGVELARSVARELVVYHRRPGGQSQFSA-LQEMDGGSERIRRALGFAREHLHQALTVD 232 D G A + AR+LV++ +RPGGQSQFS L G+ R + HL L V+ Sbjct: 185 QDLGHASAIATARQLVMFIKRPGGQSQFSTPLATQSTGAGRFAELHAWIAAHLADDLHVE 244 Query: 233 LLAEVACLSRRQFDRAFAAETGQTPARAIEQMRAEAARLRIEQSQDTLESIARATGFGDA 292 LA A +S R F R + AETG+TPAR +E MR EAAR +E+++ L+ IA G+G+ Sbjct: 245 NLAHRAGMSPRTFARLYVAETGRTPARTVELMRLEAARRALEETRLPLKRIASQAGYGEE 304 Query: 293 DRMRRACLRLFGQPPQAMR 311 +RR LR G P R Sbjct: 305 QNLRRVFLRQLGVSPGQYR 323 >gi|300312798|ref|YP_003776890.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 179 bits (455), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/322 (38%), Positives = 169/322 (52%), Gaps = 17/322 (5%) Query: 4 RETAFLIFADCSMLDFTGPLSAFDAANRLAGKTLYRLTLYSEPGGMIR-----SSAGALI 58 R F+ F LD GP+ F A LA + Y L + S G ++R S AG + Sbjct: 18 RTVVFIAFDGAEPLDLMGPIGVFSRAEELAPGS-YALRVASVDGALLRTRSPLSLAGIVP 76 Query: 59 HTERIGRTSFDTLIVAGGGAPREGLVSPALTTTPPPAGAPR----TRRIAGICTGAFVLA 114 + GR DT++VAGG E + A T R RRI ICTGAFVL Sbjct: 77 LSSIEGR--LDTVLVAGG---HEQAIHQAATEVALVEWLNRRGRQARRIGSICTGAFVLG 131 Query: 115 ATGLLDGKRATTHWRMAAKLQQMHPAVKVDSDRIYSRDGAVWTSAGISAGIDLALALIED 174 A GLLDG+ TTHW LQQ P KVD D IY DG + TSAG++ GIDLALAL+ D Sbjct: 132 AAGLLDGRYVTTHWAAVDLLQQYFPKAKVDPDAIYRIDGPICTSAGVTTGIDLALALVRD 191 Query: 175 DHGVELARSVARELVVYHRRPGGQSQFSA-LQEMDGGSERIRRALGFAREHLHQALTVDL 233 D G E+A ++AR+LV++ RPG Q Q SA L + L + +H + ++V+ Sbjct: 192 DLGQEIASAIARDLVLFLHRPGRQQQISATLVAQQSAGDLFSALLVWMLDHPQEDMSVNA 251 Query: 234 LAEVACLSRRQFDRAFAAETGQTPARAIEQMRAEAARLRIEQSQDTLESIARATGFGDAD 293 LAE A +S R F R F E G+ P + + ++R + A +E++ ++E IA +G +AD Sbjct: 252 LAERAAMSPRNFARRFLREVGKPPGQYVLELRIDHACRHLEKTGWSIERIAERSGLKNAD 311 Query: 294 RMRRACLRLFGQPPQAMR-RLA 314 + R + G P R RLA Sbjct: 312 TLHRVFRQHLGMTPAQYRARLA 333 >gi|300311694|ref|YP_003775786.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 375 Score = 134 bits (338), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 143/286 (50%), Gaps = 8/286 (2%) Query: 38 YRLTLYSEPGGMIRSSAGALIHTERIGRT---SFDTLIVAGGGAPREGLVSPALTTTPPP 94 Y +L S GGMI +S+ I T + +FD++I+A G P L Sbjct: 73 YHFSLLSVRGGMITTSSSVQIGTLSLQHHDIRAFDSIIIADGRGNFADCNDPQLLNWLAT 132 Query: 95 AGAPRTRRIAGICTGAFVLAATGLLDGKRATTHWRMAAKLQQMHPAVKVDSDRIYSRDGA 154 A A RIA +CTG VLA GLLD K+ HW + +LQ+ P + V+ +D Sbjct: 133 A-ALHAPRIAALCTGVLVLAEAGLLDRKKVAAHWALRDRLQREFPDIHVEPGDTLVQDQN 191 Query: 155 VWTSAGISAGIDLALALIEDDHGVELARSVARELVV--YHRRPGGQSQFSALQ--EMDGG 210 V+TSA G ++ALALIEDD G A + + L V +H+ S+ S ++ E Sbjct: 192 VFTSADSGTGAEVALALIEDDLGSSFAHRIEQSLTVRQHHQFKHSLSRGSEIRPGEKRHR 251 Query: 211 SERIRRALGFAREHLHQALTVDLLAEVACLSRRQFDRAFAAETGQTPARAIEQMRAEAAR 270 SERI++AL + EH+ ++ + A+ +S R F R F ETG+TP + ++R EAA Sbjct: 252 SERIQKALIWLDEHMSSSINMSEAADHVSMSERNFQREFKRETGETPHCFLTKIRIEAAC 311 Query: 271 LRIEQSQDTLESIARATGFGDADRMRRACLRLFGQPPQAMRRLARA 316 L ++++ +E IAR G + + R + G P R+ A Sbjct: 312 LYLKETDLPIEKIARRCGLVSGEHLARLFRKHHGVSPGEYRKKENA 357 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,037,525 Number of extensions: 42754 Number of successful extensions: 191 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 186 Number of HSP's successfully gapped: 7 Length of query: 331 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 245 Effective length of database: 1,212,660 Effective search space: 297101700 Effective search space used: 297101700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)