BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0011.p
         (304 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313084|ref|YP_003777176.1| hypothetical protein Hsero_3790...   622   e-180
gi|300313643|ref|YP_003777735.1| hypothetical protein Hsero_4359...   131   7e-32

>gi|300313084|ref|YP_003777176.1| hypothetical protein Hsero_3790
           [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  622 bits (1605), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 303/304 (99%), Positives = 304/304 (100%)

Query: 1   MMDKEELVKRVHRELADSYDEEMELELEDRTIDPVTGEFSSAHGEQEKEYRRLYFRELFR 60
           MMDKEELVKRVHRELADSYDEEMELELEDRTIDPVTGEFSSAHGE+EKEYRRLYFRELFR
Sbjct: 1   MMDKEELVKRVHRELADSYDEEMELELEDRTIDPVTGEFSSAHGEEEKEYRRLYFRELFR 60

Query: 61  LQGELVKLQDWVVQTGHKVVIVFEGRDAAGKGGVIKRITQRLNPRVARVAALPAPNDRER 120
           LQGELVKLQDWVVQTGHKVVIVFEGRDAAGKGGVIKRITQRLNPRVARVAALPAPNDRER
Sbjct: 61  LQGELVKLQDWVVQTGHKVVIVFEGRDAAGKGGVIKRITQRLNPRVARVAALPAPNDRER 120

Query: 121 TQWYFQRYVSHLPAAGEIVLFDRSWYNRAGVERVMGFCSDEQYEEFFRSVPEFERMLTRA 180
           TQWYFQRYVSHLPAAGEIVLFDRSWYNRAGVERVMGFCSDEQYEEFFRSVPEFERMLTRA
Sbjct: 121 TQWYFQRYVSHLPAAGEIVLFDRSWYNRAGVERVMGFCSDEQYEEFFRSVPEFERMLTRA 180

Query: 181 GIQVIKYWFSITDEEQHLRFLSRIHDPLKQWKLSPMDLESRRRWEEYTKAKEVMLERTHI 240
           GIQVIKYWFSITDEEQHLRFLSRIHDPLKQWKLSPMDLESRRRWEEYTKAKEVMLERTHI
Sbjct: 181 GIQVIKYWFSITDEEQHLRFLSRIHDPLKQWKLSPMDLESRRRWEEYTKAKEVMLERTHI 240

Query: 241 PEAPWWVVQAVDKKKARLNCIHHLLQQMPYAEVPHPPVLLPERERHEDYERHPVPDSMIV 300
           PEAPWWVVQAVDKKKARLNCIHHLLQQMPYAEVPHPPVLLPERERHEDYERHPVPDSMIV
Sbjct: 241 PEAPWWVVQAVDKKKARLNCIHHLLQQMPYAEVPHPPVLLPERERHEDYERHPVPDSMIV 300

Query: 301 PEFY 304
           PEFY
Sbjct: 301 PEFY 304


>gi|300313643|ref|YP_003777735.1| hypothetical protein Hsero_4359
           [Herbaspirillum seropedicae SmR1]
          Length = 270

 Score =  131 bits (329), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 122/237 (51%), Gaps = 8/237 (3%)

Query: 42  AHGEQEKEYRRLYFRELFRLQGELVKLQDWVVQTGHK--VVIVFEGRDAAGKGGVIKRIT 99
           + G++EK+   +      RL G L+ +Q  ++  GHK  V++V +G D +GK G +  + 
Sbjct: 28  SSGDKEKDRANVQ-----RLSG-LIGVQQQMLYAGHKHKVLVVLQGMDTSGKDGTVNDVF 81

Query: 100 QRLNPRVARVAALPAPNDRERTQWYFQRYVSHLPAAGEIVLFDRSWYNRAGVERVMGFCS 159
             +NP+  R++    P   E    Y  R  + +P AGEI +F+RS Y    + RV  +  
Sbjct: 82  AAVNPQGIRISNFKGPTAIELAHDYLWRVHAQVPVAGEIAVFNRSHYEDVLITRVHDWID 141

Query: 160 DEQYEEFFRSVPEFERMLTRAGIQVIKYWFSITDEEQHLRFLSRIHDPLKQWKLSPMDLE 219
           D++ +  +R + +FERML   G  V+K++  I+  EQ  R  SRI DP K WK  P DL 
Sbjct: 142 DKECQRRYRQINDFERMLWETGTVVLKFFLHISKAEQKSRLQSRIDDPNKHWKFDPQDLA 201

Query: 220 SRRRWEEYTKAKEVMLERTHIPEAPWWVVQAVDKKKARLNCIHHLLQQMPYAEVPHP 276
            R+ W+ Y    + +L  T    APW+VV A  K    L   + +L+ +   ++  P
Sbjct: 202 ERKFWDAYQTRYQEVLRATSTLHAPWYVVPADSKTHRNLVVANVVLETLQKLKLKFP 258


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 889,820
Number of extensions: 32903
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 2
Length of query: 304
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,217,395
Effective search space: 266609505
Effective search space used: 266609505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)