BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0009.p (364 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 729 0.0 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 361 e-101 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 359 e-100 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 338 5e-94 gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [H... 313 2e-86 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/364 (98%), Positives = 360/364 (98%) Query: 1 MAAIHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 MAAIHLKQVRKTYGAG KAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS Sbjct: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 Query: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR Sbjct: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI Sbjct: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 Query: 181 QKLHTSLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 QKLH SLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS Sbjct: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 Query: 241 PPMNLLQGKLSADGASFEVSKGNASDTLRLPQPLTGAAGQERILGVRPEHLLPILDGSAA 300 PPMNLLQGKLSADGASFEVSKGNASD LRLPQPLTGAAGQERILGVRPEHLLPILDGSAA Sbjct: 241 PPMNLLQGKLSADGASFEVSKGNASDILRLPQPLTGAAGQERILGVRPEHLLPILDGSAA 300 Query: 301 QLSLEVELVEALGAELLVHAGCGGQALVLRCPANVQVRTGQRIGASFGAGDVHWFDVKST 360 QLSLEVELVEALGAELLVHA CGGQALVLRCPANVQVRTGQRIGASFGAGDVHWFDVKST Sbjct: 301 QLSLEVELVEALGAELLVHARCGGQALVLRCPANVQVRTGQRIGASFGAGDVHWFDVKST 360 Query: 361 RRIG 364 RRIG Sbjct: 361 RRIG 364 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 361 bits (926), Expect = e-101, Method: Compositional matrix adjust. Identities = 199/380 (52%), Positives = 254/380 (66%), Gaps = 39/380 (10%) Query: 1 MAAIHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 MA++ ++ V+K +G+ +I G+D +IADGEF V+VGPSGCGKSTLLRM+AGLEEI+ Sbjct: 1 MASVQIRAVKKQFGS----TQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEIT 56 Query: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 G+I+IG VVN+++PK+RDIAMVFQNYALYPHMTV NMA+ L + K+ +D RV++ Sbjct: 57 GGEILIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKK 116 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AA IL L LL+R PRQLSGGQRQRVAMGRAIVR P VFLFDEPLSNLDAKLRVQMR EI Sbjct: 117 AADILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEI 176 Query: 181 QKLHTSLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 ++LH L+TTS+YVTHDQ+EAMT+ +++VM G+ EQ G P ++Y PA FVA FIGS Sbjct: 177 KELHQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGS 236 Query: 241 PPMNLLQGKL--SADGASFEVSKGNASDTLRLPQP----LTGAAGQERILGVRPEHLLPI 294 P MN + L +A GA E + G R+P P L G GQ+ GVRPEHL Sbjct: 237 PAMNFIPATLRRNATGAEVEFADGT-----RVPAPYGAALQGNDGQKVTYGVRPEHLSI- 290 Query: 295 LDGSAAQ-LSLEVELVEALGAELLVHAGCGGQALVLRCPANVQVRTGQRIGASFGAGDV- 352 G+A Q ++ +V +VE GA+ V + G +L + R FGAGDV Sbjct: 291 --GAAGQGIATKVIVVEPTGADTEVFSRFGDTSLT----------SIFRERHDFGAGDVI 338 Query: 353 ---------HWFDVKSTRRI 363 H FD +S + + Sbjct: 339 HLVPDHSRTHLFDAESGKSL 358 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 359 bits (922), Expect = e-100, Method: Compositional matrix adjust. Identities = 198/360 (55%), Positives = 243/360 (67%), Gaps = 6/360 (1%) Query: 1 MAAIHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 MA +++KQ+RKTY A DV+ G++ +I DGEF V+VGPSGCGKSTLLRM+ GLEEIS Sbjct: 1 MAHVNIKQLRKTYDGRA---DVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEIS 57 Query: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 G++ IG +VVN L P ER IAMVFQ+YALYPHM VY+NMA+GLK+ G SKS+IDAR++ Sbjct: 58 GGELAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRH 117 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AAAIL++ LL+R PR+LSGGQRQRVA+GRAIVR+P +FLFDEPLSNLDA LRVQ RLEI Sbjct: 118 AAAILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEI 177 Query: 181 QKLHTSLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 KLH L T +YVTHDQVEAMTLG +++VM+ G +Q GTP E+Y +P FVA FIGS Sbjct: 178 AKLHRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGS 237 Query: 241 PPMNLLQGKLS-ADGASFEVSKGNASDTLRLPQPLTGAAGQERILGVRPEHLLPILDGSA 299 P MN QG ++ D + +V L PL G LG+R E + L G Sbjct: 238 PKMNFFQGVVTRCDDSGVQVEIAGGLRLLADVDPLGVTPGAAVTLGLRAEQIREGL-GDG 296 Query: 300 AQLSLEVELVEALG-AELLVHAGCGGQALVLRCPANVQVRTGQRIGASFGAGDVHWFDVK 358 L V LVE LG A L GG +V+R N V GQ I S + H FD + Sbjct: 297 QPLHGVVNLVEHLGEANFLYVTLDGGHDIVVRGDGNRNVDIGQPIALSVHSHAFHLFDAQ 356 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 338 bits (866), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 187/364 (51%), Positives = 239/364 (65%), Gaps = 21/364 (5%) Query: 1 MAAIHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 MAA+ ++ + K Y +V+ I+ EI DGEF+V VGPSGCGKSTLLRM+AGLEEIS Sbjct: 1 MAAVSIRNLAKRYDDN----EVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEIS 56 Query: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 G + IG R +N++ +R +AMVFQ+YALYPHM++Y NMA+GLKI G SK+EIDA VQ Sbjct: 57 DGDLDIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQH 116 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AA IL + LL+R PR LSGGQRQRVA+GRAI R+P+VFLFDEPLSNLDA LRV+MRLE Sbjct: 117 AAKILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEF 176 Query: 181 QKLHTSLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 KLH L+TT +YVTHDQ+EAMTL +++V++ G EQ+G+P ++Y PA FVA FIGS Sbjct: 177 AKLHDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGS 236 Query: 241 PPMNLLQGKLS---ADGASFEVSKGN----ASDTLRLPQPLTGAAGQERILGVRPEHLLP 293 P MN + G ++ ADG ++ G A D L GQ+ LGVRPEH L Sbjct: 237 PKMNFIDGTVAAIQADGVQVQLPGGGLQWAAVDGSTL------QVGQKVTLGVRPEH-LN 289 Query: 294 ILDGSAAQLSLEVELVEALGAELLVHAGCGG--QALVLRCPANVQVRTGQRIGASFGAGD 351 I G AA L +E LG ++A G AL+LR P ++ G + + Sbjct: 290 IAQGQAA-LQARCTALELLGDFSYLYAAYEGSEDALILRVPDSLDAPHGSVLPLAADPAR 348 Query: 352 VHWF 355 H F Sbjct: 349 CHLF 352 >gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 313 bits (801), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 183/364 (50%), Positives = 240/364 (65%), Gaps = 10/364 (2%) Query: 1 MAAIHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 MA IH + + K Y G V+H +D I DGEF+V++GPSGCGKST+LRM+AGLE+IS Sbjct: 1 MADIHCQALAKHYAGGPP---VLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLEDIS 57 Query: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 G + IG VVNDL +ER++AMVFQNYALYPHM+VY N+A+GL+ +EID RV+ Sbjct: 58 GGTLRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRVRE 117 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AA+L L ALLER PR +SGGQ+QR A+ RAI++ P+VFLFDEPLSNLDAKLR Q+R +I Sbjct: 118 VAALLNLEALLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDI 177 Query: 181 QKLHTSLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 ++LH LRTT++YVTHDQ+EAMTL R+I+M G Q G+PAE+Y P F A FIG+ Sbjct: 178 KRLHQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGFIGT 237 Query: 241 PPMNLLQGKLS-ADGASF-EVSKGNASDTLRLPQPLTGAAGQERILGVRPEHL-LPILDG 297 P MN L G + DG F E + + T L A + L VRP+H+ + Sbjct: 238 PAMNFLSGTVQRQDGQLFIETAHQRWALTGERFSRLRHAMAVK--LAVRPDHVRIAGERE 295 Query: 298 SAAQLS--LEVELVEALGAELLVHAGCGGQALVLRCPANVQVRTGQRIGASFGAGDVHWF 355 AA L+ + VELVE LGA+ L+ CG Q L PA+ + G + + ++H F Sbjct: 296 PAASLTCPVSVELVEILGADALLTTRCGDQTLTALVPADRLPQPGATLTLALDQHELHVF 355 Query: 356 DVKS 359 DV+S Sbjct: 356 DVES 359 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,043,421 Number of extensions: 40292 Number of successful extensions: 538 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 351 Number of HSP's successfully gapped: 139 Length of query: 364 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 278 Effective length of database: 1,212,660 Effective search space: 337119480 Effective search space used: 337119480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)