BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0006.p
         (284 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313090|ref|YP_003777182.1| 4-hydroxybenzoate octaprenyltra...   565   e-162
gi|300313438|ref|YP_003777530.1| protoheme IX farnesyltransferas...    74   2e-14

>gi|300313090|ref|YP_003777182.1| 4-hydroxybenzoate
           octaprenyltransferase transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 284

 Score =  565 bits (1456), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 283/284 (99%), Positives = 284/284 (100%)

Query: 1   MDRLRLYALLVRAHKPIGILLLLWPTLIALWLAAGGVPDWRILVIYIVGTVLMRSAGCAI 60
           MDRLRLYALLVRAHKPIGILLLLWPTLIALWLAAGGVPDWRILVIYIVGTVLMRSAGCAI
Sbjct: 1   MDRLRLYALLVRAHKPIGILLLLWPTLIALWLAAGGVPDWRILVIYIVGTVLMRSAGCAI 60

Query: 61  NDYADRDFDRHVKRTEQRPLTSGKIKSWEALMVAGVLALVSFLLILPLNALTLQLSVAAV 120
           NDYADR+FDRHVKRTEQRPLTSGKIKSWEALMVAGVLALVSFLLILPLNALTLQLSVAAV
Sbjct: 61  NDYADRNFDRHVKRTEQRPLTSGKIKSWEALMVAGVLALVSFLLILPLNALTLQLSVAAV 120

Query: 121 IIAGTYPYFKRFFAIPQAYLGIAFGFGIPMGFASVTGTVPLAAWVLLVANIFWAVAYDTE 180
           IIAGTYPYFKRFFAIPQAYLGIAFGFGIPMGFASVTGTVPLAAWVLLVANIFWAVAYDTE
Sbjct: 121 IIAGTYPYFKRFFAIPQAYLGIAFGFGIPMGFASVTGTVPLAAWVLLVANIFWAVAYDTE 180

Query: 181 YAMVDRDDDLKIGIKTSAITFGRYDVAAVMLCYAVALALIWMVGLQYGLGLWFSAGMLVA 240
           YAMVDRDDDLKIGIKTSAITFGRYDVAAVMLCYAVALALIWMVGLQYGLGLWFSAGMLVA
Sbjct: 181 YAMVDRDDDLKIGIKTSAITFGRYDVAAVMLCYAVALALIWMVGLQYGLGLWFSAGMLVA 240

Query: 241 CGFAVYHYTLIRERDRMRCFAAFNNNNWLGAAIFAGVALDYLMR 284
           CGFAVYHYTLIRERDRMRCFAAFNNNNWLGAAIFAGVALDYLMR
Sbjct: 241 CGFAVYHYTLIRERDRMRCFAAFNNNNWLGAAIFAGVALDYLMR 284


>gi|300313438|ref|YP_003777530.1| protoheme IX farnesyltransferase
           (heme O synthase) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 297

 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 123/275 (44%), Gaps = 11/275 (4%)

Query: 15  KPIGILLLLWPTLIALWLAAGGVPDWRILVIYIVGTVLMRSAGCAINDYADRDFDRHVKR 74
           KP    L ++  +I ++L+   +PDW  ++   +G  L+  A  AIN   +R+ D  + R
Sbjct: 19  KPRVTQLAVFCAVIGMFLSTPDLPDWHKVIFGTLGIWLLAGAAFAINCLVEREIDSRMAR 78

Query: 75  TEQRPLTSGKIKSWEALMVAGVLALVSFLLILPL-NALTLQLSVAAVIIAGTYPYFKRFF 133
           T +RP+  G+I   + L+ +GVL  +   ++  L N LT+ L+ A  +    Y       
Sbjct: 79  TARRPMARGEITVGQTLVFSGVLGGLGMWVLYNLVNPLTMWLTFATFV---GYAIIYTIV 135

Query: 134 AIPQAYLGIAFG---FGIP--MGFASVTGTVPLAAWVLLVANIFWAVAYDTEYAMVDRDD 188
             P     I  G     +P  +G+A++   VP+ AWVL++    W   +    AM  RDD
Sbjct: 136 LKPATSQNIVIGGLAGAMPPALGWAAMANDVPMQAWVLVMIIFIWTPPHFWALAMYRRDD 195

Query: 189 DLKIGIKTSAITFGRYDVAAVMLCYAVALALIWMVGLQYGLGLWFSAGMLVACG--FAVY 246
             K G+    IT G       +L Y +AL  + ++    G+      G  V  G  F  Y
Sbjct: 196 YAKSGLPMLPITHGMDVTKLHVLMYTIALFAVSLLPFAIGMSGLIYLGTAVVLGAIFFWY 255

Query: 247 HYTLIRERDRMRCFAAFNNNNWLGAAIFAGVALDY 281
            + + R    +    AF  +    + +FA + +D+
Sbjct: 256 SWQMYRRYTDLIARKAFAYSIVYLSILFAVLLVDH 290


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.144    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 866,980
Number of extensions: 36001
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 2
Length of query: 284
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 200
Effective length of database: 1,222,130
Effective search space: 244426000
Effective search space used: 244426000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 130 (54.7 bits)